Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3221 ATGAAGTTCTGCAAGACCTATCAGGAGTACATGCAAGCTCAGGAGCAGAAGAAGCTCCCTGTTGTGGGATTCAAGAAGCTCAAAAAGATCATGAAAAAATGTAGACGATCTTCTCAATTCCATAAACCTTGCCCTGATCAATGCCCATTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAAATGTCAGAAATAGTGGGATGCTTTAATCAGCGTGCACAGAAACTGCTGGAACGACATCTTGCTTCTGGATTCCAAAAGTACATTCTCATGTTGAAAGGAAAATCAAAAAGGAATCATAGTACTTTAATTCATGAAGGCAGAGATCTAGTTACATATGCACTCATTAATGCTGTTGCAATTCGCAAAATACTAAAGAAATACGATAAGATTCATTATTCTAAGCAAGGGCAATTATTCAAGTCACAAGCCCAGACTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTATTGAGCTGATGGCATTACATATCAATCTACGGGAAACTAAAGACAAGCCAAGGAAGGCAACCGCATTATTCAATGGATGCTGTCTCACATTTAAGGATGGAAAACCATCACTTGCTTGTGAGCTCTTTGATTCCATCAAAATTGATATTGATCTGACTTGCTCTATATGTTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTACAGTTGTGCTTGCTCAGCTGCATCTGTTACTATTGTTGATGGGCTTAAGGAAACACATTCTAAAGAGAAATGTCCTATGTGCCGAGAGGCAGGAGTTTATGAAGGTGCTGTACACTTGGAAGAATTGAATATTTTGTTAGGAAAAAGCTGCAAGGAGTACTGGGAGGAAAGACTTCAGATGGAAAGAGTAGAGAGGGTCAAGCAAGCAAAGGAGCACTGGGAAACGCAGTGTAGAGCATTCATGGGCATCTAA 951 0.408 MKFCKTYQEYMQAQEQKKLPVVGFKKLKKIMKKCRRSSQFHKPCPDQCPLCDGTFFPSLLNEMSEIVGCFNQRAQKLLERHLASGFQKYILMLKGKSKRNHSTLIHEGRDLVTYALINAVAIRKILKKYDKIHYSKQGQLFKSQAQTMHKEILQSPWLIELMALHINLRETKDKPRKATALFNGCCLTFKDGKPSLACELFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYSCACSAASVTIVDGLKETHSKEKCPMCREAGVYEGAVHLEELNILLGKSCKEYWEERLQMERVERVKQAKEHWETQCRAFMGI* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3221 316 ProSiteProfiles Zinc finger RING-type profile. 212 261 IPR001841 -
Mtr1g3221 316 SMART ring_2 212 260 IPR001841 -
Mtr1g3221 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 316 IPR033326 -
Mtr1g3221 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 316 - -
Mtr1g3221 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 314 IPR013083 -
Mtr1g3221 316 ProSiteProfiles SPX domain profile. 1 143 IPR004331 -
Mtr1g3221 316 SUPERFAMILY RING/U-box 205 263 - -
Mtr1g3221 316 Pfam Zinc finger, C3HC4 type (RING finger) 209 262 - -
Mtr1g3221 316 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3221 Mtr-Chr1 43492570 43497349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3221 209 261 C3H Transcription Factor Family AT4G28270 41.379 1.85e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3221 K16275 - gmx:100803060 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3221 1 43492570 43497349 Mtr1g3221 1 43492570 43497349 ECH
Mtr1g3221 1 43492570 43497349 Mtr7g3426 7 51316741 51320083 PCT