Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3198 ATGGCTTTCAAGCACAGATCCATTGCCTATCTACTTTCGATCTTGCTCTTTGTATCCTTGCATGTAGCAAATGGTATTCCTCCAGAAACCATTTGTGGGTCTACCGTAAACCCTACTTATTGTAAAAACATACTTGCCAATCAAAATGGAAACAAAAAGTACTTGATGATGGTTGGAGAGGGAATCAATCAAACAGTTATCACAGGAGACCACAATGTTGTTGATGGTTTCACAACATTCAATTCGGCTACATTTGCTGTAGTTGGTCAAGGGTTTGTGGCAGTTAACATAACATTTCGCAACACCGCTGGACCAAGCAAACACCAAGCAGTTGCACTAAGAAGTGGAGCAGATATGTCCACCTTCTATAGTTGTAGCTTTGAAGGGTATCAGGACACATTGTATACACATTCTCTAAGGCAGTTTTATCGAGAATGCGATATATACGGAACAGTTGACTTCATATTTGGAAATGGTGCAGTTGTTTTGCAAAATTGTAACATTTATCCTCGCCTTCCGCTAAGTGGACAATTCAATTCCATCACAGCTCAAGGTCGAACTGATCCAAATCAAAACACTGGAACTTCTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCGAAAGTTGGAACTGTACAAACATACCTTGGGAGACCGTGGAAAGAATATTCGAGGACAGTTTTTATGCAATCTTTCATGGACAGTTTCATAAACCCTGCTGGTTGGCATGAATGGAATGGTGATTTTGCGTTGAATACTTTGTACTATGCAGAGTACAGCAACAGAGGAGCGGGTTCAAGCACCGTGAATCGAGTGACATGGCCTGGTTATCATGTTATCGGTGCTACCGATGCAGCCAATTTCACGGTGTCCAATTTCTTGAGTGGTGATGATTGGATTCCTCAAACTGGTGTTCCATACTCCAGTGGATTGATATAG 948 0.4124 MAFKHRSIAYLLSILLFVSLHVANGIPPETICGSTVNPTYCKNILANQNGNKKYLMMVGEGINQTVITGDHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNGAVVLQNCNIYPRLPLSGQFNSITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSFMDSFINPAGWHEWNGDFALNTLYYAEYSNRGAGSSTVNRVTWPGYHVIGATDAANFTVSNFLSGDDWIPQTGVPYSSGLI* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3198 315 Gene3D - 36 315 IPR012334 -
Mtr1g3198 315 ProSitePatterns Pectinesterase signature 2. 148 157 IPR033131 -
Mtr1g3198 315 PANTHER PECTINESTERASE 10 51 - -
Mtr1g3198 315 PANTHER PECTINESTERASE 51 313 - -
Mtr1g3198 315 SUPERFAMILY Pectin lyase-like 51 313 IPR011050 -
Mtr1g3198 315 Pfam Pectinesterase 50 300 IPR000070 GO:0030599|GO:0042545
Mtr1g3198 315 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 51 313 - -
Mtr1g3198 315 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 10 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3198 Mtr-Chr1 43265474 43266919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3198 51 315 Carbohydrate Esterase AT1G02810 76.981 7.24e-155 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3198 K01051 - gmx:100786124 496.508