Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3197 ATGGCTTTCAAGCACAGATCCATTGCCTATCTACTTTCGATCTTGATCTTTGTATCCTTGCATGTAGCAAATGGTATTCCTCCAGAAACCATTTGTGGGTCCACCGTAAACCCTACTTATTGTAAAAACATACTTGCCAATCAAAATGGAAACATTTATGACTACGGTCGAATTTCAATTCGAAAATCCTTATCGCAATCCCGTAAGTTCATGAACTCAATAGACTCACACCTTCAAGGTGGTTCGTCTTTGTCTCAATCCACAATTCGTGCTCTTGAAGATTGTCGATTCCTTGCTGAATTGAGTTTTGAATACTTATCAAACACCTATACAACAACAAATCAATCTAGTAATGTTCTTCCAACTTCTCAAGCAGAAGACTTTGAAACTTTTCTTAGTGCCGTTTTGACTAATCAACAAACATGTTTGGAAGGTCTAAACACTATAGCTTCTGATCAGAGAGTGAAGAATGATTTGTTGTCATCGCTCTCCGATGATATGAAGCTTCATAGTGTCACCCTAGCGTTGTTCAAAAAAGGTTGGGTTCCTAAAAATAAAATAAGAACATCATGGCCACAAAATGGAAAGCATTTGAATTTCAAAAATGGTCGTTTGCCATTGAAGATGTCAAATAAAGCACGTGCTATTTATGATTCCGCTAGACGCAATGGGAGAAAACTACTTCAAACTAATACTAATGAAGATAGTGTTGTGGTGAGTGATGTTGTCGTTGTTAGTCAAGATGGAAGTGGAAACTTTACCGCAATCAATGACGCCGTAGCTGCTGCACCAAATAACACGGTTGCTAGTGATGGATACTTCTTCATATTTATCACCAAAGGTGTGTATCAAGAGTACGTATCTATACCCAAAAACAAAAAGTACTTGATGATGGTTGGAGAGGGAATCAATCAAACAGTTATCACAGGAGACCACAATGTTGTTGATGGTTTCACAACATTCAATTCGGCTACATTTGCTGTAGTTGGTCAAGGGTTTGTGGCAGTTAACATAACATTTCGCAACACCGCTGGACCAAGCAAACACCAAGCAGTTGCACTAAGAAGTGGAGCAGATATGTCCACCTTCTATAGTTGTAGCTTTGAAGGGTATCAGGACACATTGTATACACATTCTCTAAGGCAGTTTTATCGAGAATGCGATATATACGGAACAGTTGACTTCATATTTGGAAATGGTGCAGTTGTTTTGCAAAATTGTAACATTTATCCTCGCCTTCCGCTAAGTGGACAATTCAATTCCATCACAGCTCAAGGTCGAACTGATCCAAATCAAAACACTGGAACTTCTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCGAAAGTTGGAACTGTACAAACATACCTTGGGAGACCGTGGAAAGAATATTCGAGGACAGTTTTTATGCAATCTTTCATGGACAGCTTCATAAACCCTGCTGGTTGGCATGAATGGAATGGTGATTTTGCGTTGAATACTTTGTACTATGCAGAGTACAGCAACAGAGGAGCGGGTTCAAGCACCGTGAATCGAGTGACATGGCCTGGTTATCATGTTATCGGTGCTACCGATGCAGCCAATTTCACGGTGTCCAATTTCTTGAGTGGTGATGATTGGATTCCTCAAACTGGTGTTCCATACTCCAGTGGATTGATATAG 1671 0.3974 MAFKHRSIAYLLSILIFVSLHVANGIPPETICGSTVNPTYCKNILANQNGNIYDYGRISIRKSLSQSRKFMNSIDSHLQGGSSLSQSTIRALEDCRFLAELSFEYLSNTYTTTNQSSNVLPTSQAEDFETFLSAVLTNQQTCLEGLNTIASDQRVKNDLLSSLSDDMKLHSVTLALFKKGWVPKNKIRTSWPQNGKHLNFKNGRLPLKMSNKARAIYDSARRNGRKLLQTNTNEDSVVVSDVVVVSQDGSGNFTAINDAVAAAPNNTVASDGYFFIFITKGVYQEYVSIPKNKKYLMMVGEGINQTVITGDHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNGAVVLQNCNIYPRLPLSGQFNSITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSFMDSFINPAGWHEWNGDFALNTLYYAEYSNRGAGSSTVNRVTWPGYHVIGATDAANFTVSNFLSGDDWIPQTGVPYSSGLI* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3197 556 Pfam Pectinesterase 243 541 IPR000070 GO:0030599|GO:0042545
Mtr1g3197 556 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 10 554 - -
Mtr1g3197 556 Gene3D - 236 555 IPR012334 -
Mtr1g3197 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 179 IPR035513 -
Mtr1g3197 556 Pfam Plant invertase/pectin methylesterase inhibitor 29 176 IPR006501 GO:0004857
Mtr1g3197 556 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Mtr1g3197 556 SUPERFAMILY Pectin lyase-like 238 554 IPR011050 -
Mtr1g3197 556 PANTHER PECTINESTERASE 10 554 - -
Mtr1g3197 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Mtr1g3197 556 CDD PMEI-like_3 30 181 - -
Mtr1g3197 556 SMART PMEI_2 23 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3197 Mtr-Chr1 43255365 43257534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3197 7 556 Carbohydrate Esterase AT1G02810 60.105 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3197 K01051 - gmx:100813051 860.907