Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3195 ATGAGTAGACATTTGAGCAGAACTGTCTATGTTGGGAATCTACCTGGCGATATCCGTGAAAGAGAAGTTAAACATTTGTTTATGAAGTATGGTCACATAACTCGCATTGATCTAAAGGTTCCGCCAAGACCCCCTTGCTATGCATTTGTAGTGTTTAAAGATGCTCTAAATGCTGACGATGCAATTTGCGAGTGTGATGGCTATGATTTTGATGGGTGCCGATTACGGGTCGAAGCTGCACATGTTGGTTATTGTAATTCATCTTCAAGAGATCGATACAGTATTCACAGCAATGGCCAGGGTGGTCGAGGAGTATCCAGTCACTCTGAATATCGTGTTCTAGTCAATCGACTGCCCTCTTCTGCATCCTGCCAGGATCTTAAGGATCACATGCGAAAAGCCGGGGCTGTTTGCTTTTCCCAGGTTGTTCATGATGGAAGGGTTACTACTGGGATTGTGGATTACACGAACTGCGATGATATGAAATATGCTATCAAAAACCTTGACGGCTCTGAGTTCCAGAACGCTTTTTCCAGGTCTTACGTTCATGTGAGGGAATATGATTCGAGTCGGGACTCTAGAAGTCCTGGTCGTGGCCCTTCTCAATCTAGGGGAAGAAGATATAGCCACAGTCGCAGGTGCAGCCGCAGCCGTAGCTACAGTCCAGGACATAGCCAAAGCAAATTTCCTAAGGGTAAATCCTCACAACGTTCACCAGCAAGATTAGTTTCTCGTTCTCGCTCCAGATCTAGATCCTGTTCTTTATCAGGACCACGATCAAGGCCTAGGTCTCCATTACCTCTGCGTAATAAAAGCCCCAAAAAGCACAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGACCCGTAGCAAGAGTTTGTCCAGAATGGATAACCTTATAATGGAGGCTATATCTAGCTTGAATGAGGTGGGTGGTTCTAATGAAACAAGGATTGCTAATTTCATAGAGGACCACCACGGGTCACCCTCAAACTTCAAAGAGTCGCTGTCAGCAAGACTGAAGTCTCTCACATCTAGTGGAAAACTGATCAAGGTGAAAAAATACAGGATTGCACCTACCTCAGCATATCCAGAAAGAGGAAGACAATCACCCGCGTTGGAAGGGAGGCAGAATGCCTCTATGAACTGTGACAGGGATTTGAGCTATAGCCCCACACAGTCTGAGTTAGACTTTCAATTAGCAATGATAATGTCCGTGTCTGCACAAGAGGCAGCCACATTTGCTGAAGTGGAAGCCCTCATAGAGGAAGCTGCAGAAGCTTATGTAGAAGCTGCAGGGGAAAGACTGAAGGGGAGAAACAACCCCAAAGATGGTGATCCCTGCTTTTGA 1347 0.4603 MSRHLSRTVYVGNLPGDIREREVKHLFMKYGHITRIDLKVPPRPPCYAFVVFKDALNADDAICECDGYDFDGCRLRVEAAHVGYCNSSSRDRYSIHSNGQGGRGVSSHSEYRVLVNRLPSSASCQDLKDHMRKAGAVCFSQVVHDGRVTTGIVDYTNCDDMKYAIKNLDGSEFQNAFSRSYVHVREYDSSRDSRSPGRGPSQSRGRRYSHSRRCSRSRSYSPGHSQSKFPKGKSSQRSPARLVSRSRSRSRSCSLSGPRSRPRSPLPLRNKSPKKHSASRSPSRSRTRSKSLSRMDNLIMEAISSLNEVGGSNETRIANFIEDHHGSPSNFKESLSARLKSLTSSGKLIKVKKYRIAPTSAYPERGRQSPALEGRQNASMNCDRDLSYSPTQSELDFQLAMIMSVSAQEAATFAEVEALIEEAAEAYVEAAGERLKGRNNPKDGDPCF* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3195 448 MobiDBLite consensus disorder prediction 372 387 - -
Mtr1g3195 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mtr1g3195 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Mtr1g3195 448 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 288 358 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g3195 448 Gene3D - 111 188 IPR012677 -
Mtr1g3195 448 Pfam linker histone H1 and H5 family 295 352 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g3195 448 MobiDBLite consensus disorder prediction 215 259 - -
Mtr1g3195 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mtr1g3195 448 SUPERFAMILY "Winged helix" DNA-binding domain 289 367 IPR036390 -
Mtr1g3195 448 MobiDBLite consensus disorder prediction 268 283 - -
Mtr1g3195 448 SUPERFAMILY RNA-binding domain, RBD 6 177 IPR035979 GO:0003676
Mtr1g3195 448 SMART h15plus2 289 354 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g3195 448 MobiDBLite consensus disorder prediction 362 387 - -
Mtr1g3195 448 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 5 287 - -
Mtr1g3195 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Mtr1g3195 448 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mtr1g3195 448 SMART rrm1_1 112 181 IPR000504 GO:0003723
Mtr1g3195 448 Gene3D - 288 366 IPR036388 -
Mtr1g3195 448 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 287 - -
Mtr1g3195 448 MobiDBLite consensus disorder prediction 185 295 - -
Mtr1g3195 448 Gene3D - 2 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3195 Mtr-Chr1 43208147 43215374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3195 294 407 Single Myb Histone (SMH) Gene Family AT1G49950 41.803 4.53e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3195 K12890 - gmx:100789847 327.791