Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3187 ATGTGTGGTGGTGCTATCATCGCTGACTTCATTCCTCGCCGTGACGGCCGCCGTCTCACCGCCTCGGAGCTCTGGCCTAACTCATTTGGCCAACAGATTGACTCCTCAAACTTCGGTTTTTCTCATACTGCTGCTGATCAACAACCACCCAGCACTCTCAAAAGATCACAGCCTCCCAAAGTTAATGAACGAGTTGAGAAGCCACTGAAAAAACAGAGGAAGAATCTCTATAGAGGAATTCGACAGCGTCCATGGGGAAAATGGGCTGCAGAGATTCGTGATCCAAGAAAAGGAGTTCGTGTTTGGCTTGGTACATTCAACACTGCTGAAGAAGCTGCTAGAGCTTACGACAAAGAAGCTCGAAAAATCCGTGGCAAAAAAGCTAAGGTTAATTTTCCTAACGAAGATGATGAATATACCATTCATGCTACTCGTCGCTACAATAATAATCCTCCACCGATTCGACCACAGAAGCTTCCTCTATATCATCAACAACACTATCAGAAGAATCTGAACTTGGAATTTGGTTATGATCTGAACCAAACTGACACAATTCATGCTATCAATACTGGTTCTGGTGGTGATGAGAATTCTTTATTTGGGTCTGGTTCAGTTTCAGAGGTTGGTTTTTCTGTGATGGAGTTCAATGGTGGTTCCAATCAGAATGAATTCGGTTATTTTGGTGGTGTTGTGAATGAACATGAAAAAGAGAAAGAGAAAGTGGTAGAACAAGAAACACATGTTGTTGAACAAGCTGAAGCTGAATTAGCAAAAAATGAGGTACAAGAATTGTCTGATGAATTGTTGGCATACGAGGATTACATGAAGTTTTATCAGATTTACTATGATGGACAATCAGTGATGCCACCTAATAATGTTCAGGAACATGTGGTTGGAGATTTATGGAGCTTTGATTGA 918 0.4172 MCGGAIIADFIPRRDGRRLTASELWPNSFGQQIDSSNFGFSHTAADQQPPSTLKRSQPPKVNERVEKPLKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEDDEYTIHATRRYNNNPPPIRPQKLPLYHQQHYQKNLNLEFGYDLNQTDTIHAINTGSGGDENSLFGSGSVSEVGFSVMEFNGGSNQNEFGYFGGVVNEHEKEKEKVVEQETHVVEQAEAELAKNEVQELSDELLAYEDYMKFYQIYYDGQSVMPPNNVQEHVVGDLWSFD* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3187 305 Coils Coil 235 274 - -
Mtr1g3187 305 MobiDBLite consensus disorder prediction 36 58 - -
Mtr1g3187 305 MobiDBLite consensus disorder prediction 36 69 - -
Mtr1g3187 305 PANTHER EREBP TRANSCRIPTION FACTOR 38 281 - -
Mtr1g3187 305 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Mtr1g3187 305 Pfam AP2 domain 77 125 IPR001471 GO:0003700|GO:0006355
Mtr1g3187 305 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Mtr1g3187 305 CDD AP2 77 134 IPR001471 GO:0003700|GO:0006355
Mtr1g3187 305 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Mtr1g3187 305 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Mtr1g3187 305 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Mtr1g3187 305 PANTHER DNA-BINDING DOMAIN 38 281 IPR044808 GO:0003700|GO:0009873
Mtr1g3187 305 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3187 Mtr-Chr1 43165432 43166939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3187 1 134 AP2-EREBP Transcription Factor Family AT3G16770 53.901 2.28e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g3187 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3187 K09286 - gmx:100780763 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3187 1 43165432 43166939 Mtr1g3187 1 43165432 43166939 ECH