Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3183 ATGTCTACTGATTCTCATCCACCTAATCTATATGCCAAAGGGCTTCTTTGTAATGCTGGTGCTGGTGCTGCAGCTGGAGTTATTGCTGCTACGTTTGTGTGTCCTTTAGATGTGATTAAAACCAGGTTTCAGGTTCATGGGACTCCTCAGCTTGCTAATGGAAGTGTTAGGGGTAGTCTTATAGTTGGTAGTTTGGGACAGATATATCACAAGGAGGGGATGCGTGGCATGTATCGCGGGCTAGCCCCGACTGTTCTGGCCTTACTTCCAAATTGGGCTATTTATTTTACCATGTACGAGCAGCTCAAGAGGCTGCTTTCTAATGATGAAAGCCATCATCTTTCAGTTGGAGCTAATGTGGTAGCTGCTTCAGGTGCCGGAGCTGCAACTACTATGGTTACAAATCCATTTTGGGTTGTCAAAACTAGACTCCAAACCCAGGGAATGAGACCCGGTGTTGTGCCGTATAGAAGCACACTATCTGCTTTGAAGAGAATAGCTCACGAGGAGGGCATTCGTGGGATGTACAGTGGTCTTGTACCTGCTCTGGCTGGTATCAGTCATGTAGCCATCCAGTTTCCAACATACGAGAAAATAAAATTTCATTTAGCAAATCAAGATAACACAACAGTGGATAAGCTCGGCGCACGTGATGTTGCAATTGCCTCATCAGTCTCCAAAATTTTTGCATCCACGTTGACATATCCTCATGAGGTTGTTCGATCCAGATTGCAAGAACAAGGACACCACTCAGAGAAGCGATACTCTGGTATGACAGACTGCATTAGAAAGGTATTTCAACAAGAGGGACTTTCTGGATTTTACCGTGGGTGTGCCACCAATCTTCTGAGGACAACCCCAGCTGCCGTAATCACATTCACCAGTTTTGAAATGATACACCGTTTTCTAGTTTCTCTTTCCCCTTCTGACCCACAATAG 939 0.4515 MSTDSHPPNLYAKGLLCNAGAGAAAGVIAATFVCPLDVIKTRFQVHGTPQLANGSVRGSLIVGSLGQIYHKEGMRGMYRGLAPTVLALLPNWAIYFTMYEQLKRLLSNDESHHLSVGANVVAASGAGAATTMVTNPFWVVKTRLQTQGMRPGVVPYRSTLSALKRIAHEEGIRGMYSGLVPALAGISHVAIQFPTYEKIKFHLANQDNTTVDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGMTDCIRKVFQQEGLSGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLSPSDPQ* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3183 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 105 IPR018108 -
Mtr1g3183 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 202 IPR018108 -
Mtr1g3183 312 SUPERFAMILY Mitochondrial carrier 16 298 IPR023395 -
Mtr1g3183 312 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 312 - -
Mtr1g3183 312 Gene3D Mitochondrial carrier domain 110 305 IPR023395 -
Mtr1g3183 312 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 312 IPR044712 GO:0006862|GO:0055085
Mtr1g3183 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 214 302 IPR018108 -
Mtr1g3183 312 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085
Mtr1g3183 312 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085
Mtr1g3183 312 PRINTS Mitochondrial carrier protein signature 80 100 IPR002067 GO:0055085
Mtr1g3183 312 PRINTS Mitochondrial carrier protein signature 129 147 IPR002067 GO:0055085
Mtr1g3183 312 PRINTS Mitochondrial carrier protein signature 223 245 IPR002067 GO:0055085
Mtr1g3183 312 Gene3D Mitochondrial carrier domain 2 109 IPR023395 -
Mtr1g3183 312 Pfam Mitochondrial carrier protein 16 109 IPR018108 -
Mtr1g3183 312 Pfam Mitochondrial carrier protein 113 205 IPR018108 -
Mtr1g3183 312 Pfam Mitochondrial carrier protein 220 304 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3183 Mtr-Chr1 43119992 43126370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3183 1 310 Chloroplast and Mitochondria Gene Families AT2G47490 76.452 1.41e-166 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3183 K15115 - gmx:100500213 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3183 1 43119992 43126370 Mtr1g3183 1 43119992 43126370 ECH