Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3169 ATGGGAAGAACTCCTTGTTGTGCAAAAGTAGGGTTGAAAAGAGGAAGATGGACAGCAGAAGAAGATGAGATCTTGTCAAAATACATTCAAGCCAATGGAGAAGGTTCTTGGAGGTCATTGCCAAAGAATGCAGGATTATTAAGGTGTGGGAAGAGTTGTAGACTAAGATGGATTAACTATTTGAGAACTGATCTAAAAAGAGGGAACATTTCTGCTCAAGAGGAAGATACCATTGTGAAGCTCCATACTACTTATGGTAACAGGTGGTCCATGATAGCTAGCCACTTGCCAGGAAGAACGGACAATGAAATTAAAAATCATTGGAATTCTCACCTAAGCAGAAAAATCTACAGTTTCTCAAAAATTTCCACAACTATAGAGCCAAAGATCATGGATATTGTTCGTCCTCCTAAGCGTAAATGTGGTAAAACAAGTCGTTGGGCCATGAAGAAGAACAAAAGCTACAAAAAACAAACCATTATTAATACTAAAGAAAATTATATTGAACCAGAAGTTCAAATTCCACGTACTCCTTCACTAGATTGTGAAGTTACAGAGAAAATAATCGATGACGTGGAGGTAAAAACAACACATGATGAGAAAGAAACAACGTATGAATTATGTGACGACATCTTAGGGCTTAGTGAGTTGTTAGATGACATTAATGAAGACAGTGGGGCAATGTGTATAAGTACTCATGTCAAGACAATGGAAAATTGTTTGCTGGAAACAAGTGGGTCTGTTTCAAATTTAAGTCAAGAGAGAGAAATGATGGGTGATGGAGGTGAAGAAAATGAAAGAACAACCAATGATGATGGAGACTGTCTTAAATATAATTTGGTTTCATGTGAAGACCCCGAAAGTAGTGTGAACCAAACCTCAAACAACGGTGAAAGTGGAGAATGGTCTTTGAATATGGGTTTAGATTTGGATGATAAATGGAATTGGGAGAGTGTTATGGAATTTAGTTTTGATGATGATAATAGTAATAGGGAGCATAAAGAAAATCTTTTGAATTGGTTGTGTGAAGATGATGATTGGGAAGGTGATAGTAAGAGGTTGGGTGAGATAGATTCTCAGAAACAAAATGATTTGATTGCTTGGTTTCTCTCTTGA 1116 0.3683 MGRTPCCAKVGLKRGRWTAEEDEILSKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISAQEEDTIVKLHTTYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYSFSKISTTIEPKIMDIVRPPKRKCGKTSRWAMKKNKSYKKQTIINTKENYIEPEVQIPRTPSLDCEVTEKIIDDVEVKTTHDEKETTYELCDDILGLSELLDDINEDSGAMCISTHVKTMENCLLETSGSVSNLSQEREMMGDGGEENERTTNDDGDCLKYNLVSCEDPESSVNQTSNNGESGEWSLNMGLDLDDKWNWESVMEFSFDDDNSNREHKENLLNWLCEDDDWEGDSKRLGEIDSQKQNDLIAWFLS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3169 371 PANTHER MYB TRANSCRIPTION FACTOR 2 345 - -
Mtr1g3169 371 SMART sant 13 63 IPR001005 -
Mtr1g3169 371 SMART sant 66 114 IPR001005 -
Mtr1g3169 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr1g3169 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr1g3169 371 CDD SANT 16 61 IPR001005 -
Mtr1g3169 371 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr1g3169 371 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr1g3169 371 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr1g3169 371 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 345 - -
Mtr1g3169 371 Gene3D - 14 66 - -
Mtr1g3169 371 CDD SANT 71 112 IPR001005 -
Mtr1g3169 371 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr1g3169 371 MobiDBLite consensus disorder prediction 252 271 - -
Mtr1g3169 371 MobiDBLite consensus disorder prediction 257 271 - -
Mtr1g3169 371 Gene3D - 71 116 - -
Mtr1g3169 371 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3169 Mtr-Chr1 42997470 43001936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3169 1 371 MYB Transcription Factor Family AT2G47460 39.900 2.41e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g3169 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3169 K09422 - gmx:100814275 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3169 1 42997470 43001936 Mtr1g3169 1 42997470 43001936 ECH
Mtr7g3470 7 51684212 51687075 Mtr1g3169 1 42997470 43001936 PCT