Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3162 ATGCTTGAAACGAGTCACTCTTCGCGAGTCTTTCGCGGTGTTCATTTCGCTCTCTTCGGCTTCGATCATCTCACAGAAAACAAGATTCGATTCAAGCTTGTTAATGGCGGTGGAGTTGATGCGGGGAAGAACACTGGAAATTGCACGCATGTTATTGTTGATAAAATTGCTTATGACGATCCGGTGTGTGTTGCTGCGAGAGAGGATGGAAAGACGTTGGTGACTGCATTGTGGGTTGAACATAGTGCTGATATTGGAATGCCTGTTGATGCTACCTCGGTTATGTACAGACCGCTTAAAAAATTGGATGGAATTCCGGGTGCAAAAGATTTGGTTGTCTGCTTGACTGGCTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAGTTTTCTAAACCATTGGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGGGAGAAGTACGAGCTTGCCAAGAGATTGGCCACAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGGATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTGGAGATGATGGCGGAAGAGGCTAAGGATTCTGAGGATGAGGCTGAAGATTCCAAGCTGGGGCAATCAGGGGGAAGGACTATTAGCAAAAGTCCCCTTGGTTCAAAATTTGGCACAACTGCGACTCATGGATTGTCAAAACCTTTAAGAGAGGAGGCATCAAATGCCATCCCAAATTCTACTGGTCCACAGGTTTTTCCAAATGCCAATAAGGGTAAAGACTCTTCGATTACTACAGGAAATAAGAACAATTCTGGTCAAGATGTAGACTTGAATAATATTGGCGACCTGAAGGGTCAAGATCAAGATATTACTGGAAATATAAATTCATCTGGTCTGCGGCCTAATCTGCATGGTGACAATTTGGAGACCAAGATAAGTTACACAAGATCAACTTCTACAAGTGCTGATGGACTTGCCCATTCAGATGAAAAGCTTGGTGCTACGAGTTATTCTAGAAAGAACCAAAAAGAGTTTACCTTTTCCAGGGTAGTAGATCAATATGAAGGCAGAGAAGGCAACAGTCTTGAAACCCCTTCCACCAAGGTAGAAAAGACAAGTGAGGGAATCAAATCTGCATGTGTTGAAGGTTCTGGGAATGAAACCGGTGTTATTCAAGAGGTTTATCGAAATAATTCATTGCCTCAAAAGAGGACAAATGAAGCTGCTTCTTCTACCAAATTAAAATCAAGAAAGATCACTAGTAATGCAAAATTGTCTATTGAAAAAACACCACTAACAAATGGTAAATCTCAAGGATTGAAAGTGCCATCTGTGGTTGATGAGCCACCTGTGTCTGATGGCTTTCTTTCTGTTGACAAAGATGGTATAAATAACTTGAATACCTGCTTGATTTCTAAATCTGCAGCTTCTGCCTCCAACTCAGTGGCATTTGATAAGCCTATCTCAGGAAACGCAGAATCTGCTCAACTTGATAATGCTTATCAGAATTCAGCACAAAAGACTGTTCAGAGCTTAAATAAGTCTAAAATTGGTGGTGAGCCCGATGTAACAGGTTTTGGAAAGGGGCACGGTGATAACGAAGAAGAGCAACTTAATGTCACAACACATCTTGAGTGTTCATCACCTGGAAAAAATTCAAAGAATGAAGGATTTCCAGGTCTTGATAATTTGGATTTAAGCAACGAAGAAAGCAATAAGCTGATCAGAAAGTCACCCCGCAAGAAGTCAGCTGCCAAGAGAACTTTGGGTTCTAGACCCAGAAAAGGTGTTACTGCTAAACTGAAAAGTTCAGTTTGCTTGAATAAAACTACACAGCAAGACGAAGGTGTAAGTTCTTCCGGCAGAAGCAAAGAAATAGCAACTTCTGGTGCTAAGGAGCGTCAGGCATCACCCCAAATCCTTGATGTTAACAAATTGATGGAGCAAAAACCGGTTAATGGATATGCAGAAGGTGCTGGTGGCAGAACTGATTTTTTGGATGACGAAACAGAGGCTCCTGATGACAAATGTGAATCTGAGTTGGGAATGGCTCCTAATGAGGAATTGGTTCACCTTTCAAAAAAAGTAGACACCTCAACGGAAGAGAAGTTAGAAGCAGTTAACCATGATAAAAAATGTGAAGAACCATTGCCTCCTAAAAAAGTCACAAATGAAACTAAAAAACAGAACCTACCTTCAGAGTTAGACTCAACCTCAAAGTTAAAAGTAAAGCATCAAGCGATAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGTTGCAAAGAGATTAGCAAAATCGGAAAAGGCAGTATTTGGGGAGAAGATTCCGAATGAGACAAGGGATGAGGCAGAGATAAAAATCCTGAAAGAAATGTCATTGTCTGTGCCTTCTGATATAAGTGAGAACTCAAATGCACCAAAAAATAAGCCAGAGAATTTTATTGAAGAGGAAAAGGAGAATAGACCAAATGATGGAGAGCACGGTTTAGAGGAGAGAAGAAATGTTCGAACAACTAAATCTAGTGTTAAGCCAGCAAATATCAAGTCTAAGGAAATGAAACATGCTCCATCTACATCAGAGTTTAATGCAAGAGTAAAACCTGAAACCACATGTTTTATTTTAAGTGGGCATCGCCTACAGAGAAAGGAGTTTCAACAGGTAATCAAGCGTTTGAAAGGAAGAGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGATCCTTTAAGGAGGACTGAGAAATTTTTTGCCGCTACTGCATCAGGAAGGTGGATTCTGAAAACTGATTTCTTAAGTGCCAGTAGCCAGGCAGGGAAATTATTGCCAGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGTGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCACGGTGCCTTCTATGGGATGCGCATTGTTGTATATGGTGACTGTTTTGCTCCACCTTTGGATACTCTTAAGCGTGCAGTCAAAGCTGGAGATGGAACAATATTAGCAACATCTCCTCCTTATACTCGCTTCCTTGATACTGGGGTCGACTATGCCATAGTTAGCCCTGGCATGCCACGCGTTGATCTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGCGTTGTAGCGGACTACTTGGTTGAGTATGTCTGCAAGCCCGGGTTCTCCCTTGAGAGACATGTACTGTACGGCACTAATGCTTTGGCAGATAGGTCATTTGCAAAACTTCAAAGTAAGGCAGAAGAAATTATTGAGGAAGTTATTCCTCATGAGGAGTGTGATAATGACGATGATGATGTAGCTTGCCAAGTATGTGGATCCCGGGAAAGAGGAGATGTCATGCTGATTTGTGGTGATGAAAGTGGTTCTGTTGGCTGTGGAGTGGGTACTCATATCGACTGCTGTGATCCTCCGCTGGCCGCTGTTCCCGAGGAGGATTGGTTTTGCCCTAAATGCAGTAGCACCCAAACATGCTCAAAAAAAGCCAATAAAAGGAAAAAGGGTGCACTGTCTTCATCCAAGGCAAAGTCTTTTGCCAAATATCAAAGTAAGGCAGAAGAGATTGTCGAGGAGGTCATTCCTCATGTGGGTTGCAATGAAGATGATGTAGCTTGCCAAGTATGTGAATTGCGGGAAAGAGGAGATGTGATGCTGATTTGTGGTGATGAAACTGGTTCCGTTGGCTGTGGAGTGGCTACCCATTTCGATTGCTGTGATCCTCCGCTGACGGCTATTCCCGAAGAGGATTGGTTATGCCCAAAATGCATTAGAACCCAAAAATGCTCAAAAAAAGTCAATAAAAGGAAAAAGGGTGCATTGTCTTCATCAAAGGCCAAGTGA 3924 0.4238 MLETSHSSRVFRGVHFALFGFDHLTENKIRFKLVNGGGVDAGKNTGNCTHVIVDKIAYDDPVCVAAREDGKTLVTALWVEHSADIGMPVDATSVMYRPLKKLDGIPGAKDLVVCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLATIKLVNHRWLEDCLKDWVLLPEDKYNKSGFELEMMAEEAKDSEDEAEDSKLGQSGGRTISKSPLGSKFGTTATHGLSKPLREEASNAIPNSTGPQVFPNANKGKDSSITTGNKNNSGQDVDLNNIGDLKGQDQDITGNINSSGLRPNLHGDNLETKISYTRSTSTSADGLAHSDEKLGATSYSRKNQKEFTFSRVVDQYEGREGNSLETPSTKVEKTSEGIKSACVEGSGNETGVIQEVYRNNSLPQKRTNEAASSTKLKSRKITSNAKLSIEKTPLTNGKSQGLKVPSVVDEPPVSDGFLSVDKDGINNLNTCLISKSAASASNSVAFDKPISGNAESAQLDNAYQNSAQKTVQSLNKSKIGGEPDVTGFGKGHGDNEEEQLNVTTHLECSSPGKNSKNEGFPGLDNLDLSNEESNKLIRKSPRKKSAAKRTLGSRPRKGVTAKLKSSVCLNKTTQQDEGVSSSGRSKEIATSGAKERQASPQILDVNKLMEQKPVNGYAEGAGGRTDFLDDETEAPDDKCESELGMAPNEELVHLSKKVDTSTEEKLEAVNHDKKCEEPLPPKKVTNETKKQNLPSELDSTSKLKVKHQAIKRPASKTKKTTVAKRLAKSEKAVFGEKIPNETRDEAEIKILKEMSLSVPSDISENSNAPKNKPENFIEEEKENRPNDGEHGLEERRNVRTTKSSVKPANIKSKEMKHAPSTSEFNARVKPETTCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPLRRTEKFFAATASGRWILKTDFLSASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRAVKAGDGTILATSPPYTRFLDTGVDYAIVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTNALADRSFAKLQSKAEEIIEEVIPHEECDNDDDDVACQVCGSRERGDVMLICGDESGSVGCGVGTHIDCCDPPLAAVPEEDWFCPKCSSTQTCSKKANKRKKGALSSSKAKSFAKYQSKAEEIVEEVIPHVGCNEDDVACQVCELRERGDVMLICGDETGSVGCGVATHFDCCDPPLTAIPEEDWLCPKCIRTQKCSKKVNKRKKGALSSSKAK* 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 555 773 - -
Mtr1g3162 1307 ProSiteProfiles Zinc finger PHD-type profile. 1230 1286 IPR019787 -
Mtr1g3162 1307 CDD BRCT_TopBP1_rpt7 883 956 - -
Mtr1g3162 1307 Pfam PHD-finger 1233 1284 IPR019787 -
Mtr1g3162 1307 Pfam PHD-finger 1130 1182 IPR019787 -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 701 733 - -
Mtr1g3162 1307 Pfam BRCA1 C Terminus (BRCT) domain 887 951 IPR001357 -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 755 771 - -
Mtr1g3162 1307 SMART PHD_3 1232 1284 IPR001965 -
Mtr1g3162 1307 SMART PHD_3 1129 1181 IPR001965 -
Mtr1g3162 1307 SUPERFAMILY FYVE/PHD zinc finger 1227 1291 IPR011011 -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 250 288 - -
Mtr1g3162 1307 Pfam twin BRCT domain 111 175 IPR001357 -
Mtr1g3162 1307 SUPERFAMILY BRCT domain 8 92 IPR036420 -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 822 850 - -
Mtr1g3162 1307 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1203 1283 IPR044254 -
Mtr1g3162 1307 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1180 IPR044254 -
Mtr1g3162 1307 Gene3D BRCT domain 1 95 IPR036420 -
Mtr1g3162 1307 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Mtr1g3162 1307 SMART BRCT_7 875 956 IPR001357 -
Mtr1g3162 1307 SMART BRCT_7 8 86 IPR001357 -
Mtr1g3162 1307 SMART BRCT_7 994 1081 IPR001357 -
Mtr1g3162 1307 SMART BRCT_7 106 183 IPR001357 -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 734 748 - -
Mtr1g3162 1307 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 295 317 - -
Mtr1g3162 1307 SUPERFAMILY BRCT domain 883 970 IPR036420 -
Mtr1g3162 1307 Gene3D BRCT domain 993 1093 IPR036420 -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 808 871 - -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 202 317 - -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 614 646 - -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 526 545 - -
Mtr1g3162 1307 ProSiteProfiles BRCT domain profile. 884 966 IPR001357 -
Mtr1g3162 1307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1208 IPR013083 -
Mtr1g3162 1307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1224 1306 IPR013083 -
Mtr1g3162 1307 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1180 - -
Mtr1g3162 1307 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1203 1283 - -
Mtr1g3162 1307 SUPERFAMILY FYVE/PHD zinc finger 1112 1181 IPR011011 -
Mtr1g3162 1307 Gene3D BRCT domain 877 992 IPR036420 -
Mtr1g3162 1307 Gene3D BRCT domain 99 220 IPR036420 -
Mtr1g3162 1307 MobiDBLite consensus disorder prediction 219 239 - -
Mtr1g3162 1307 ProSiteProfiles Zinc finger PHD-type profile. 1127 1183 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3162 Mtr-Chr1 42915158 42923202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3162 129 245 Core DNA Replication Machinery Family AT4G02110 64.103 1.40e-39 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr1g3162 BRCT 1.7e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3162 K10728 - gmx:100783461 1118.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3162 1 42915158 42923202 Mtr1g3162 1 42915158 42923202 ECH