Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3156 ATGGGAGAAGTTGTTTTGTTGGTTGATGATTTGAAATCAATATCTGGATTTTCTCGTTGTAGAATATGCCATGAAGAAGAATTTGAAAGCTTCAAAAGCTTAGAAGCTCCTTGTGCATGTTCTGGTACAGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGCAATGAAAAAGGAAATACAACTTGTGAAATTTGTCTACAGCAATATGAACCTGGATATACAACACCCCCACCAAAGAAATCACTAAAACCTGAAGAAGCAATGACCATTGGCATTAGAGATAGCCTTGAAATATCAAGGAGGGAGGAAGAAGAGTTAAACAGAAGAATAGTTGGTATAGTTGAAGGTGTAACAAGACAAAACAATTACTCTCAATGCACCTATGCTGCAGATAGAAGTGCCTCTTGCTGCAGATCACTGGCTTTAGCATTTACTCTCATATTGCTTCTAAGACATCTTTTTGCTTTGCTTACAAATGGAATGGAAGATTATCCATTTACAATTCTTACAATCTTTATACTAAGGGCCAGTGGAATTATTATACCTATGTGCATAATTATTAGGACTATGGGAGCCATTCATAAAAGTATCCAGCGTCATTATCATCAGTATTCTGAAGATGACTCATTGATGTCTGATGGAGATGATGAAGAAAATGGGACACCACATATTGCAATTTTAAGACATTCACATTATTAG 705 0.3589 MGEVVLLVDDLKSISGFSRCRICHEEEFESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTTPPPKKSLKPEEAMTIGIRDSLEISRREEEELNRRIVGIVEGVTRQNNYSQCTYAADRSASCCRSLALAFTLILLLRHLFALLTNGMEDYPFTILTIFILRASGIIIPMCIIIRTMGAIHKSIQRHYHQYSEDDSLMSDGDDEENGTPHIAILRHSHY* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3156 234 SMART ringv_2 19 68 IPR011016 GO:0008270
Mtr1g3156 234 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Mtr1g3156 234 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 231 - -
Mtr1g3156 234 CDD RING_CH-C4HC3_MARCH 20 67 - -
Mtr1g3156 234 Pfam Protein of unknown function (DUF3675) 73 192 IPR022143 -
Mtr1g3156 234 SUPERFAMILY RING/U-box 18 72 - -
Mtr1g3156 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 77 IPR013083 -
Mtr1g3156 234 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 231 IPR033275 -
Mtr1g3156 234 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3156 Mtr-Chr1 42838146 42840547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3156 20 67 C3H Transcription Factor Family AT2G37950 44.898 4.83e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3156 - - gmx:100797029 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3156 1 42838146 42840547 Mtr1g3156 1 42838146 42840547 ECH
Mtr7g3478 7 51764470 51767076 Mtr1g3156 1 42838146 42840547 PCT