Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3136 ATGGAGAAGAAAGACATGGGTCTAAGTGTGAAGAGTGAGGATGTTGTTGATTCCTCCTCATCTTTGCTAAATAATGGTTATCAATTTTCAAGCGTGTTTGATTTCTGTGAGGTTGAAAGGAGTTCTTCTTTAGGGTTTATGGAGTTACTTGGTGGTCATGACTATAGTCCTCTCCTTGATGTACCACAACTATCAACCATGTCTACTGTTAAGGCTTCATCTGACACCACTGGAAAAGAGTGTTCTGAGGTTTTGAACCAGCAACAACCTGCAACTCCTAATTCTTGTTCGATTTCATCAGCATCTAGTGAAGCAGTCAATGATAATAAAACTCTTGTTGACCAAGCAGAAGAAGATGAAGAAGAAGAAAAGCAAAAGACAAATAAACAGTTGAAAACGAAGAAGACAAATCTAAAGAGACAGAGAGAACCAAGATTTGCTTTCATGACGAAAAGCGAGGTTGATCATCTGGAAGATGGATACCGATGGAGAAAGTACGGTCAAAAAGCTGTCAAAAATAGCCCTTTTCCAAGGAGCTACTATCGTTGCACCACTGCTTCATGTAATGTCAAGAAACGTGTGGAACGTTCTTATACTGATCCAAGCATTGTAGTCACAACTTATGAAGGCCAACATACACATCCAAGTCCAACTATGTCCCGTTCCGCCTTTGCCGGAGTTCAAATACCACAACCCGCCGGTGTAGTCTCGGGTGGATTTTCAACCACTAACTTTGGTTCAGTTTTGCAAGGGAACTACTTATCACAATATCATCAACAACCCTATCAACATCAACAACTACTTGTTAATACATTGTCCTCTTTGAGTCACCCTTATAACAATTCTTCATCATTCAAGAATTCACCTTTTACTACTCAAGAGAGAGTACAGCTTTGTAATCCAGGAACAACTGCATTTCTTAGGGATAATGGGTTACTTCAAGATGTTGTTCCTTCACATATGTTGAAAGAAAAGTAG 978 0.3957 MEKKDMGLSVKSEDVVDSSSSLLNNGYQFSSVFDFCEVERSSSLGFMELLGGHDYSPLLDVPQLSTMSTVKASSDTTGKECSEVLNQQQPATPNSCSISSASSEAVNDNKTLVDQAEEDEEEEKQKTNKQLKTKKTNLKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSYTDPSIVVTTYEGQHTHPSPTMSRSAFAGVQIPQPAGVVSGGFSTTNFGSVLQGNYLSQYHQQPYQHQQLLVNTLSSLSHPYNNSSSFKNSPFTTQERVQLCNPGTTAFLRDNGLLQDVVPSHMLKEK* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3136 325 PANTHER WRKY TRANSCRIPTION FACTOR 1 317 - -
Mtr1g3136 325 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g3136 325 Coils Coil 106 141 - -
Mtr1g3136 325 MobiDBLite consensus disorder prediction 87 110 - -
Mtr1g3136 325 SMART WRKY_cls 157 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g3136 325 MobiDBLite consensus disorder prediction 87 144 - -
Mtr1g3136 325 PIRSF WRKY_txn_fact_IIc 1 325 IPR017396 GO:0003700
Mtr1g3136 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 317 IPR044810 GO:0003700
Mtr1g3136 325 SUPERFAMILY WRKY DNA-binding domain 149 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g3136 325 ProSiteProfiles WRKY domain profile. 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g3136 325 Gene3D WRKY domain 143 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3136 Mtr-Chr1 42638700 42640831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3136 31 325 WRKY Transcription Factor Family AT2G47260 46.526 1.10e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr1g3136 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3136 - - aprc:113872234 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3136 1 42638700 42640831 Mtr1g3136 1 42638700 42640831 ECH
Mtr7g3499 7 51988680 51990547 Mtr1g3136 1 42638700 42640831 PCT