Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3126 ATGGATGTGAAAAATATCCTCGGAGGATTGCCCAATTTTTCCTTCCCACTTCAAGAGAAGAATTCTAGCGAGGTGTGTGCACTTACTGGTGGATTTGCACCTCTTATGCCAGCAGTTGATTTGTCTCTGTTGAAAAAAAAGCCTCCTTCAGACAAAAAGGTCATTTGGCGATGGCTTCCTTTCAAAAATTCTGCTCGTAAAGATGATCTTCAGCTTCACCATTGGATTCAAGTTGTAAATGGTGTTCCACCAACAGGGGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGACATAACAAGATACACGGACGAGGAGTATGAGAAATATTTGGCAAATCCTAAATGGACCAAGGAGGAAACAGATCAACTGTTTGACTTGTGTGAGAGGTTTAATCTCCGATTTATTGTTATAGCTGATAGGTTCCCTTCATCTCGAACTGTTGAAGAATTGAAGGATCGATATTATAGTGTATCCCGGGCTATGTTAATTGCCAGGAATCCATCTTCTACGGATGTTGCAATGGATCCACTTGTTCAGGAACCATATAACGTTTCACAGGAGATGGAACGGAAACGAGCTCAGTCTCTGATCCTTTCTCAAACAAAGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCCGAAGCAAAAAGAATTGCTGAATTACGCATAATGACCAAGGTTGACCTAGAGTCTGAGTTGGATGTTGCTTCAAAGGCTTGTGCAAACGTTACAGAGAGGGCCAACCCCGGTGAAACTGTATCTCCATCAAATACAGAACTTCCACCAATAGTTGTTTCTTCCATGACATCGACAGATAATGCATCTACCATAGCCTCTCTTCGCATGCTTTATGTCTATTCAAGAACCTATGCACTTGGACAAATGGTGCAATCTGCAAGCTCATCAGCTGGACTTCGGACTATCAAACGTGTTGATCAAACTTTGCAGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAACTGTTTGTGCAGAGCATCTAGAACTAAGAAATGAAATACTAACCTTGCTAAATCTTCAGAAACAGCTGCAAAATAAGGAGGTTGAAGGTTCATCTTTTCGTGACGGGTCACACTGCGAAACAACGGGAACACCAAAGCGTTTGCATCGAGGCGGAGATCAGGATCTGACATTTGTTCCAGATAACACAAGTTCTGGGGGGGAAAGAATTGGTAAAAGGGATCAAAAGCGCAAGAAACTTCATCATCACCAGCCCATTCAAAAAGACAAAAAAAACTAA 1269 0.4192 MDVKNILGGLPNFSFPLQEKNSSEVCALTGGFAPLMPAVDLSLLKKKPPSDKKVIWRWLPFKNSARKDDLQLHHWIQVVNGVPPTGDYSFAKYNKSVDITRYTDEEYEKYLANPKWTKEETDQLFDLCERFNLRFIVIADRFPSSRTVEELKDRYYSVSRAMLIARNPSSTDVAMDPLVQEPYNVSQEMERKRAQSLILSQTKQQERRDEEVLAEAKRIAELRIMTKVDLESELDVASKACANVTERANPGETVSPSNTELPPIVVSSMTSTDNASTIASLRMLYVYSRTYALGQMVQSASSSAGLRTIKRVDQTLQELGVNLKPRVPTKTVCAEHLELRNEILTLLNLQKQLQNKEVEGSSFRDGSHCETTGTPKRLHRGGDQDLTFVPDNTSSGGERIGKRDQKRKKLHHHQPIQKDKKN* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3126 422 Coils Coil 339 359 - -
Mtr1g3126 422 PANTHER BNAA04G26950D PROTEIN 22 377 - -
Mtr1g3126 422 MobiDBLite consensus disorder prediction 404 422 - -
Mtr1g3126 422 CDD SANT_DMAP1_like 116 158 - -
Mtr1g3126 422 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 22 377 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Mtr1g3126 422 Coils Coil 227 247 - -
Mtr1g3126 422 MobiDBLite consensus disorder prediction 370 384 - -
Mtr1g3126 422 SUPERFAMILY Homeodomain-like 113 163 IPR009057 -
Mtr1g3126 422 SMART sant 112 161 IPR001005 -
Mtr1g3126 422 Gene3D - 85 172 - -
Mtr1g3126 422 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 302 365 IPR008468 GO:0005634|GO:0045892
Mtr1g3126 422 MobiDBLite consensus disorder prediction 358 422 - -
Mtr1g3126 422 Pfam SANT/Myb-like domain of DAMP1 88 162 IPR032563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3126 Mtr-Chr1 42540975 42549057 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr1g3126 DMAP1 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3126 K11324 - gmx:100818926 568.54