Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3123 ATGGTTCCAAGAAGGTGTTTCCACCTTATTTTGTTGGTTCTTTCATGTTTATGCTTCAGCTGCAGATCAGAAATGGAGTCTGATTTTGACAAATGGATATCATGGAACGTCAAGAATTACCAGAGAAAGACCATTATGGAAAAGAGATATAGGAATGTTAGTGGCAATGTGCAAGGTCTTGATCCTAAGCTGAAGAAAGCTGAGAGTAATAAAGTTAGATTAAAAGTTAGTCAAGATGGTTCAGCTCAATTTAAGAGTATTACAGAAGCTCTTAATAGCATTCAACCTTATAACATTAGAAGAGTGATTATCTCCATTGCACCGGGTTACTATAGGGAGAAAATTGTAGTCCCAAAAACACTCCCTTTCATAACATTCCTAGGGGACGTAAGGGATCCACCAACTATAACTGGAAATGATACACAATCTGTCACCGGAAGCGATGGGGCTCAGTTGAGAACATTCAATAGTGCCACTGTTGCCGTGAATGCTAGCTATTTTATGGCCATCAACATTAATTTTGAGAACACTGCTTCATTTCCTATTGGGTCGAAAGTAGAACAAGCTGTTGCGGTTCGCATCACCGGGAATAAAACTGCCTTTTACAATTGCACATTCTCTGGTGTTCAAGACACCCTATACGATCACAAAGGCCTTCATTACTTCAACAATTGCACTATTAAAGGCTCAGTTGATTTCATTTGTGGTCATGGGAAATCCCTCTATGAGGGTTGCACTATAAGGTCCATAGCCAACAACATGACCTCCATTACAGCTCAAAGTGGTTCAAATCCGTCATATGATAGTGGATTTTCCTTTAAAAATAGTATGGTAATAGGTGATGGACCAACTTATCTTGGAAGACCATGGGGAAATTATTCACAAGTTGTTTTCTCCTACACCTATATGGACAACAGTGTTCTGCCCAAAGGATGGGAAGATTGGAATGACACAAAGCGCTACATGAATGCATATTATGGAGAATATAAGTGTAGTGGACCTGGATCCAACACCGCCGGAAGAGTCCCATGGGCACGGATGCTAAATGACAAAGAAGCTCAAGTCTTTATTGGGACTCAATACATTGATGGGAACACTTGGCTAATCAGCCCTTAA 1116 0.4023 MVPRRCFHLILLVLSCLCFSCRSEMESDFDKWISWNVKNYQRKTIMEKRYRNVSGNVQGLDPKLKKAESNKVRLKVSQDGSAQFKSITEALNSIQPYNIRRVIISIAPGYYREKIVVPKTLPFITFLGDVRDPPTITGNDTQSVTGSDGAQLRTFNSATVAVNASYFMAININFENTASFPIGSKVEQAVAVRITGNKTAFYNCTFSGVQDTLYDHKGLHYFNNCTIKGSVDFICGHGKSLYEGCTIRSIANNMTSITAQSGSNPSYDSGFSFKNSMVIGDGPTYLGRPWGNYSQVVFSYTYMDNSVLPKGWEDWNDTKRYMNAYYGEYKCSGPGSNTAGRVPWARMLNDKEAQVFIGTQYIDGNTWLISP* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3123 371 Pfam Pectinesterase 75 365 IPR000070 GO:0030599|GO:0042545
Mtr1g3123 371 PANTHER PECTINESTERASE 22 369 - -
Mtr1g3123 371 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 22 369 - -
Mtr1g3123 371 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Mtr1g3123 371 Gene3D - 68 370 IPR012334 -
Mtr1g3123 371 SUPERFAMILY Pectin lyase-like 74 368 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3123 Mtr-Chr1 42513024 42515073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3123 74 368 Carbohydrate Esterase AT5G47500 45.455 1.17e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3123 K01051 - cit:102614801 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3123 1 42513024 42515073 Mtr1g3123 1 42513024 42515073 ECH
Mtr7g3151 7 48518755 48521264 Mtr1g3123 1 42513024 42515073 PCT