Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3122 ATGGATACTAATTACAAAACCAATATGCATGTAATGAGGAGTTTTTCAGATTGTGGTTCATCAGTTACAGATGTAAGTCAAGAAGATACTATGGTAATAAAGAAAGGTCCATGGACAGAAGAGGAGGATACTATTCTGATGAACTATGTGGCAGTCCATGGAGATGGTCATTGGAACTCCGTGGCTCGCTGTTCGGGTCTAAAGAGAACCGGGAAAAGCTGCAGATTAAGATGGTTGAACTATTTGCGTCCAAATGTTCGACGTGGGAACATCACTCTCCAAGAACAAGTCTTGATCCTTGATCTTCATTCCCGTTGGGGAAATCGGTGGTCTAAAATAGCGGAACAATTACCGGGAAGAACCGACAATGAAATAAAGAACTATTGGAGAACAAGAGTGGTGAAGCAAGCTAGGCAACTAAAATGTGATGTAAACAGTCAACAGTTTAGGGACACATTGCGTTACGTATGGATTCCACGTCTTATCGAGAGAATCCAATCTTCTGGTGCAACTGCAGATACTAATTCCTATAGCCACGGACAAATCACCACTTGCAAAAATACTAAAGCTCATAGTGAAACTTGTGGGGCAAATGCAAATCCTCCAATGTTGCAGTCTGAGGTTTCATCGTACTCGTCAGGGGTTGAAGTTCAAGTAGAATCAAACGTATCTTACAATTTAATGGATTGTGCAGAACTGGGATCCACGTGGCAGGACTGGAACTGTTTAGACTCAAACATCCAAGAATTTGAACAGAGCAATGTTTTTGGTGATTCAGAATTGTGGACAGATGAAAACATATGTTTCTTGCAGCAACAATTGGCTGATGATTTATGA 837 0.4098 MDTNYKTNMHVMRSFSDCGSSVTDVSQEDTMVIKKGPWTEEEDTILMNYVAVHGDGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQVLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSQQFRDTLRYVWIPRLIERIQSSGATADTNSYSHGQITTCKNTKAHSETCGANANPPMLQSEVSSYSSGVEVQVESNVSYNLMDCAELGSTWQDWNCLDSNIQEFEQSNVFGDSELWTDENICFLQQQLADDL* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3122 278 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Mtr1g3122 278 Gene3D - 32 88 - -
Mtr1g3122 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Mtr1g3122 278 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Mtr1g3122 278 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Mtr1g3122 278 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 25 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mtr1g3122 278 CDD SANT 92 131 IPR001005 -
Mtr1g3122 278 Gene3D - 92 133 - -
Mtr1g3122 278 SMART sant 87 135 IPR001005 -
Mtr1g3122 278 SMART sant 34 84 IPR001005 -
Mtr1g3122 278 PANTHER TRANSCRIPTION FACTOR MYB108 25 232 - -
Mtr1g3122 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Mtr1g3122 278 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Mtr1g3122 278 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Mtr1g3122 278 CDD SANT 37 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3122 Mtr-Chr1 42508952 42510291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3122 26 277 MYB Transcription Factor Family AT2G47190 46.494 6.46e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g3122 Myb_DNA-binding 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3122 K09422 - gmx:100819467 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3122 1 42508952 42510291 Mtr1g3122 1 42508952 42510291 ECH