Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3121 ATGAGAGGTATGGATATTAAGGTTCAGAAAGGTGGGTCTGCAAAGGAAAATGAGACAGGGGTAAGAAAAGGTCCTTGGACGTTAGAAGAGGACACCATTCTGGTTGATTACATTACAATACACGGTGAAGGTCACTGGAATACCCTTGCATCTTCTGCAGGTTTGAGGAGAAGTGGTAAAAGTTGTAGATTAAGGTGGTTAAACTACTTGCGTCCCGATTTACGTCGTGGAAATATCACACTTCAAGAACAGATATTGATTCTTGACCTCCACTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCACAACATCTACCAGGTAGAACGGACAATGAAATAAAAAACTATTGGAGAACAAGAGTGATCAAACAAGCAAAGCAACTCAAATGTGATGTAAACAGCAAACAGTTCAGAGATGTATTGCGTCACGTTTGGATGCCCCGATTACTCGAACAAATTCAACCCGCACCACAATTCCCCGACACGAATAATCCAAACGGATCACATATCCTTCTTCACCAAAACACATTGCAAAGTTCAGTTTCAGGAATCAGTGGTATTTCCTCGGACTCTTCATCAGTAGAATTCCAAGTTGCTTCAAATTCGGACCAAAATGATTCTTCGGAGCTTTTGGGCCATGAAGGTTCAAAACTATGGTCAAGTTTCAATAACCAGCAGGTTTCAGAACAGGAGAAGAGCGGTGCTTGTGATGGTGACTCGTTGTGGAACGATGAGAACATGTGGTTTTTGCAACAACTTTATGAAGATGTTGAAATAAAATACAATTTACTTGCGTGA 798 0.4148 MRGMDIKVQKGGSAKENETGVRKGPWTLEEDTILVDYITIHGEGHWNTLASSAGLRRSGKSCRLRWLNYLRPDLRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDVLRHVWMPRLLEQIQPAPQFPDTNNPNGSHILLHQNTLQSSVSGISGISSDSSSVEFQVASNSDQNDSSELLGHEGSKLWSSFNNQQVSEQEKSGACDGDSLWNDENMWFLQQLYEDVEIKYNLLA* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3121 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 256 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mtr1g3121 265 Gene3D - 80 121 - -
Mtr1g3121 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 70 IPR017930 -
Mtr1g3121 265 PANTHER MYB TRANSCRIPTION FACTOR 3 256 - -
Mtr1g3121 265 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Mtr1g3121 265 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Mtr1g3121 265 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Mtr1g3121 265 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Mtr1g3121 265 Gene3D - 23 75 - -
Mtr1g3121 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Mtr1g3121 265 CDD SANT 80 119 IPR001005 -
Mtr1g3121 265 SMART sant 22 72 IPR001005 -
Mtr1g3121 265 SMART sant 75 123 IPR001005 -
Mtr1g3121 265 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g3121 265 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Mtr1g3121 265 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3121 Mtr-Chr1 42496046 42497587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3121 21 164 MYB Transcription Factor Family AT1G48000 72.917 2.65e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g3121 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3121 K09422 - gmx:778065 307.76