Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3116 ATGATGGCAACAGCGGGTGTAGCACCTGCTTCTGGATTAGTAGATGTAAATGCAAGTTCAGCTATTGCTGTTGATAAGTTACCTGATGAGATTCTTGGCATGAGAATTAAGGATGATAAGGAAATGGAAGCACATGTGGTAGATGGAAATAGTACTGAAGCAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCGTGCTGTTGGACAGGGATCGTTTGGTGTAGTTTTCCAGGCTAAGTGCTTGGAGACAGGTGAAACCGTGGCTATAAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAATTGCAAACAATGCGCCTTCTGGACCATCCCAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGACGAGCTCTATCTTAACTTGGTACTTGAGTTTGTTCCTGAGACTGTCCATCGTGTGATCAGACACTACAGCAAAATGAATCAGAGGATGCCATTGATATATGTAAAACTTTATTCTTACCAGATATTGAGATCACTAGCTTATATTCATAACTGCGTTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGGTTAATCCTCACACCCATCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTATTGGTCAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTATTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAATACACCTCAGCCATTGACATTTGGTCAGCTGGCTGTGTACTTGGCGAACTATTGCTTGGCCAGCCTCTCTTTCCCGGTGCGAGTGGAGTAGACCAGCTCGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACCGAGTTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCGCAAGCGTATGCCACCGGAAGCTGTGGATCTTGTCTCAAGACTACTTCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTGGTTCATCCATTCTTTGATGAATTGCGTGATCCAAATACCCGCTTACCAAATGGGCGTCATCTTCCTCCTTTATTTAATTTCAAAGCCAACGAGCTTAAGGGAGTGCCTGCTGAAATGCTGGTGAAGCTGGTTCCGTCTCACGCAAGAAAGCAGTGTACTTTGTTTGCGTCGTCATAG 1239 0.4278 MMATAGVAPASGLVDVNASSAIAVDKLPDEILGMRIKDDKEMEAHVVDGNSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEFVPETVHRVIRHYSKMNQRMPLIYVKLYSYQILRSLAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLVPSHARKQCTLFASS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3116 412 Pfam Protein kinase domain 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3116 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Mtr1g3116 412 Gene3D Phosphorylase Kinase; domain 1 59 154 - -
Mtr1g3116 412 ProSitePatterns Protein kinases ATP-binding region signature. 81 105 IPR017441 GO:0005524
Mtr1g3116 412 CDD STKc_GSK3 70 362 IPR039192 -
Mtr1g3116 412 Gene3D Transferase(Phosphotransferase) domain 1 155 403 - -
Mtr1g3116 412 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 2 409 - -
Mtr1g3116 412 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 409 - -
Mtr1g3116 412 ProSiteProfiles Protein kinase domain profile. 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3116 412 SUPERFAMILY Protein kinase-like (PK-like) 74 383 IPR011009 -
Mtr1g3116 412 SMART serkin_6 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3116 Mtr-Chr1 42438724 42444048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3116 79 366 MAP Kinase Gene Family AT4G01370 36.364 3.63e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Mtr1g3116 Pkinase 3.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3116 K00924 - gmx:100788046 769.229