Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3115 ATGGTGGCTGAAGCAGAGGTTGTTGTGTGTCAACAAAGCGTGGATGTGAAGTATTTTCCGAATAAAGGAAGCAATAATCACGAGATCGGTGATGTAGATTCGAATTTTGATCGAGTTCGTGTTTCTGAATCAGTTTCTGCTGAGTTACTTACTACAAAAGAAGATGTCAGGACTACAGATAAAATCTCGGAAGCTGCTCTTGACTCTGCGGTTCTGCAATTTGTCCCCAGCATCCGTTCCGGTAGTTTTGCCGACATTGGGCCGCGTAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCATCTGGGATCACTATACAATTTTCCTAAACCAAGTGCCTTTTATGGGGTGTTTGATGGTCACGGAGGACCTGAAGCTGCTGCTTATATAAGAAAAAACGTTCTAAAATTCTTCTTTGAGGATGTCAATTTCCCTCAGATATCTGAAGTTGATAATGTATTTTTACAAGAGGTAGAGAATTCCCTCAGAAAGGCTTTTCTTTTGGCAGACTCAGCTTTGGCTGATGATAGCAATGTGAACACTTCATCAGGGACCACAGCTCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCAAATGCCGGTGACTGCCGAGCAGTTCTCAGTCGTAAAGGAGAGGCCATTGACATGTCTCAAGATCATAGGCCTATTTATCCATCAGAGCGGAGGCGAGTTGAAGAATTGGGTGGCTACGTAGAGGATGGTTATCTTAATGGCGTTTTATCAGTTACGAGAGCACTAGGGGACTGGGACATGAAGTTACCTAGGGGTACTCCCTCACCTTTGATTGCAGATCCTGAGTTCCGCCAAGTGGTTCTAACAGAGGATGACGAATTCCTCATCATAGGATGCGACGGCATCTGGGATGTGATGACAAGTCAGCATGCTGTTAGCCTTGTTCGTAAAGGTTTGAGGAGGCACGATGACCCAGAGAAGTGCGCCAGGGATTTAGTTATGGAGGCATTACGGCTCAACACATTTGACAATCTTACAGTGATCATCATATGCCTCTCCTCCCTTGACCATGGGGAGTCAGAGCCATCACCACCTCCCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAGCTTGTTGGAAGGCAATGCTAGCAACTGA 1173 0.451 MVAEAEVVVCQQSVDVKYFPNKGSNNHEIGDVDSNFDRVRVSESVSAELLTTKEDVRTTDKISEAALDSAVLQFVPSIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLYNFPKPSAFYGVFDGHGGPEAAAYIRKNVLKFFFEDVNFPQISEVDNVFLQEVENSLRKAFLLADSALADDSNVNTSSGTTALTALIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPSERRRVEELGGYVEDGYLNGVLSVTRALGDWDMKLPRGTPSPLIADPEFRQVVLTEDDEFLIIGCDGIWDVMTSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIICLSSLDHGESEPSPPPQRKLRCCSLSAEALCSLRSLLEGNASN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3115 390 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 371 - -
Mtr1g3115 390 Pfam Protein phosphatase 2C 89 341 IPR001932 -
Mtr1g3115 390 Gene3D - 58 355 IPR036457 -
Mtr1g3115 390 ProSiteProfiles PPM-type phosphatase domain profile. 79 349 IPR001932 -
Mtr1g3115 390 SMART PP2C_4 69 347 IPR001932 -
Mtr1g3115 390 CDD PP2Cc 78 349 IPR001932 -
Mtr1g3115 390 PANTHER PROTEIN PHOSPHATASE 2C 1 371 IPR015655 GO:0004722|GO:0006470
Mtr1g3115 390 SMART PP2C_SIG_2 94 349 IPR001932 -
Mtr1g3115 390 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Mtr1g3115 390 SUPERFAMILY PP2C-like 74 351 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3115 Mtr-Chr1 42429952 42432900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3115 92 386 PP2C-type Phosphatase Gene Family AT3G62260 68.919 4.29e-152 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Mtr1g3115 PP2C 1.6e-65 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3115 K14803 - gmx:100819791 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3115 1 42429952 42432900 Mtr1g3115 1 42429952 42432900 ECH