Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3110 ATGGGGGAAAGATTGGGTGCTGAAAATTATCATTTTTATGGTGTTGGTGGTTCATCTGATTTGAGTGGGATGGGGAAGAGGTCAAGAGAGTGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTTATAGCTAGCCGTGTGAATCAGGTGCAGGCCGAGAGTTTGCGAGTGGGACAACAATTTTTCCCACTCGGGTCTGGGATCCCGGTGGTTGGAGGTTCGTCCAATACGTCTTCTTCATGCTCTGAGGAAGGAGATCTTGAGAAAGGGAATAAGGAAGGCGAGAAGAAAAGGAGAGTTATTGTGCTGGAAGATGATGGTTTGAATGATAAAGCTGGTGCACTCAGCTTAAATCTTGCAGGACATGTTTCACCGGTGGTGGAAAGGGACGGAAAAAAGAGTAGAGGAGCTGGAGGAACTTCGAATCGAGCTGTTTGTCAGGTTGAAGACTGTGGTGCAGATCTGAGTAGAGGCAAGGATTATCACAGACGTCATAAAGTTTGTGAGATGCATTCTAAGGCTAGTAGGGCTCTTGTGGGAAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACATACTTGAAGAGTTCGATGAAGGAAAGAGAAGCTGTCGAAGACGCTTGGCTGGCCATAACAAACGTAGAAGGAAAACAAATCAAGAAGCTGTTCCTAATGGAAGTCCAACAAATGATGATCAGACTAGTAGTTATCTGTTGATTAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGCCTACAGATCAGGATCTATTAACTCATCTTCTAAGGAGTCTTGCAAGTCAGAATGATGAACAAGGGAGCAAGAACTTGTCAAACCTTTTACGAGAACAAGAGAATTTGTTGAGAGAAGGGGGTTCTTCAAGAAATTCAGGGATGGTATCAGCTTTATTCTCCAATGGTTCTCAGGGGTCTCCAACTGTTATAACACAACATCAACCTGTATCTATGAATCAAATGCAACAAGAAATGGTGCATACACATGATGTTAGGACCTCTGATCATCAACTCATATCTTCAATAAAGCCCAGCATTTCAAACAGTCCTCCGGCTTACTCGGAAACAAGAGATAGTAGTGGACAAACAAAGATGAATAATTTTGATTTGAATGACATATACGTTGACTCAGATGATGGCACAGAAGATCTAGAAAGACTGCCCGTCTCTACAAATCTTGCTACTAGCTCTGTTGACTACCCTTGGACACAACAAGATTCTCATCAGTCAAGTCCAGCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGCGGAGAAGCCCAGAGTCGCACAGACCGAATTGTTTTTAAACTCTTCGGGAAAGAGCCAAATGAATTTCCTCTTGTACTTAGAGCACAGATTCTAGATTGGTTATCCCAGAGTCCTACTGATATTGAGAGCTACATACGCCCTGGTTGTATTGTTTTGACCATATATCTGCGTCAGGCTGAGGCTGTGTGGGAGGAACTTTGCTGTGATCTGACCTCCAGTTTGATTAAGCTACTGGATGTCTCAGATGATACGTTTTGGAAAACTGGATGGGTTCATATCAGAGTGCAACATCAAATGGCATTCATTTTCAATGGTCAAGTTGTCATAGATACATCACTACCTTTCCGAAGCAACAATTATAGCAAAATTTGGACTGTTAGTCCAATTGCTGTACCGGCATCAAAGAGAGCTCAATTTTCTGTTAAAGGTGTCAACCTGATGCGCCCTGCCACAAGGTTAATGTGTGCTTTAGAAGGAAAATATCTGGTCTGTGAAGATGCTCATGAGTCAACGGATCAATACTCCGAGGAGCTTGATGAACTTCAGTGCATCCAATTTTCATGTTCTGTACCTGTGTCAAATGGAAGAGGATTTATCGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTCTTTCCTTTCATAGTGGCAGAAGAGGATGTTTGCACAGAGATCCGTGTGCTTGAACCTCTACTAGAATCAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAAATTAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGCTGGCTTCTTCACAGAAGCCAATTGAAATATAGGATGGTTAACTTGAACTCTGGTGTAGATCTCTTTCCATTACAACGGTTCACGTGGCTTATGGAGTTTTCAATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGCTGAACCTACTCCTTGATGAAACTGTGAATAAAGGAGATCACCCTACATTGTATCAAGCACTTTCAGAGATGGGTCTTCTTCACAGAGCTGTAAGGAGAAATAGCAAACAGTTAGTGGAGCTGCTTTTGCGATATGTTCCTGACAATACATCTGATGAACTAGGACCCGAAGACAAGGCGCTTGTTGGTGGAAAGAATCATAGCTACTTGTTTAGACCTGATGCTGTTGGTCCTGCCGGTTTGACACCACTTCATATAGCAGCGGGAAAAGATGGTTCCGAGGATGTACTGGATGCTCTGACTAATGATCCTTGCATGGTGGGAATTGAGGCATGGAAGAATGCCCGTGACAGTACAGGCTCCACACCTGAGGATTATGCGCGATTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAAACACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCCAGCAATATGACAGAGAGCAATAAAAACCCGAAGCAAAATGAGTCATTCACTAGCTTAGAGATCGGAAAAGCTGAAGTAAGACGTAGCCAAGGGAACTGTAAACTTTGTGATACTAAAATTTCTTGTAGAACTGCAGTAGGAAGGTCTATGGTATACAGACCTGCAATGCTCTCTATGGTGGCCATAGCAGCAGTCTGTGTTTGTGTGGCTCTTCTGTTTAAGAGCTCACCCGAAGTTCTATACATGTTCCGACCTTTCAGATGGGAATCATTGGATTTCGGAACAAGCTAA 3012 0.4273 MGERLGAENYHFYGVGGSSDLSGMGKRSREWNLNDWRWDGDLFIASRVNQVQAESLRVGQQFFPLGSGIPVVGGSSNTSSSCSEEGDLEKGNKEGEKKRRVIVLEDDGLNDKAGALSLNLAGHVSPVVERDGKKSRGAGGTSNRAVCQVEDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILEEFDEGKRSCRRRLAGHNKRRRKTNQEAVPNGSPTNDDQTSSYLLISLLKILSNMHSDRSDQPTDQDLLTHLLRSLASQNDEQGSKNLSNLLREQENLLREGGSSRNSGMVSALFSNGSQGSPTVITQHQPVSMNQMQQEMVHTHDVRTSDHQLISSIKPSISNSPPAYSETRDSSGQTKMNNFDLNDIYVDSDDGTEDLERLPVSTNLATSSVDYPWTQQDSHQSSPAQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPLVLRAQILDWLSQSPTDIESYIRPGCIVLTIYLRQAEAVWEELCCDLTSSLIKLLDVSDDTFWKTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKIWTVSPIAVPASKRAQFSVKGVNLMRPATRLMCALEGKYLVCEDAHESTDQYSEELDELQCIQFSCSVPVSNGRGFIEIEDQGLSSSFFPFIVAEEDVCTEIRVLEPLLESSETDPDIEGTGKIKAKSQAMDFIHEMGWLLHRSQLKYRMVNLNSGVDLFPLQRFTWLMEFSMDHDWCAVVKKLLNLLLDETVNKGDHPTLYQALSEMGLLHRAVRRNSKQLVELLLRYVPDNTSDELGPEDKALVGGKNHSYLFRPDAVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKTQGAAHVVVEIPSNMTESNKNPKQNESFTSLEIGKAEVRRSQGNCKLCDTKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLDFGTS* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3110 1003 SUPERFAMILY Ankyrin repeat 758 889 IPR036770 -
Mtr1g3110 1003 MobiDBLite consensus disorder prediction 334 380 - -
Mtr1g3110 1003 Gene3D - 743 905 IPR036770 -
Mtr1g3110 1003 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Mtr1g3110 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1002 - -
Mtr1g3110 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1002 IPR044817 GO:0003677
Mtr1g3110 1003 MobiDBLite consensus disorder prediction 410 449 - -
Mtr1g3110 1003 SUPERFAMILY SBT domain 145 225 IPR036893 GO:0003677|GO:0005634
Mtr1g3110 1003 MobiDBLite consensus disorder prediction 211 237 - -
Mtr1g3110 1003 MobiDBLite consensus disorder prediction 74 95 - -
Mtr1g3110 1003 MobiDBLite consensus disorder prediction 350 380 - -
Mtr1g3110 1003 Pfam SBP domain 147 220 IPR004333 GO:0003677
Mtr1g3110 1003 Gene3D - 137 208 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3110 Mtr-Chr1 42394456 42401466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3110 16 1003 SBP-box Gene Family AT3G60030 56.095 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr1g3110 SBP 7.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3110 - - gmx:100814273 1628.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3110 1 42394456 42401466 Mtr1g3110 1 42394456 42401466 ECH