Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3108 ATGAACGGAAAAATATTAGTCTCTGGTGTATCCATCATTCTTGTGGTGGGTGTTGCCATCGGTGTTGTCGTCGTTGTTAACAAAAAGGATGATCCTGCATTAGCAGCACACGAAAAGAATGTACAAACCATGTGTCAAACAACTGAAGATCAAAAACTTTGTCATGACACTCTTGGCTCCGTGAAACCTGCTAATTCCTCTGACCCAACAGCTTATTTAGCAGCTGCAGTTCAGGCAAGTGCCCAAAGTGTTATCCTTGCGTTGAATATGAGTGATAAGTTAACGGTTGAACATGGCAAGGACAAACCTGGTGTCAAAATGGCCCTTGATGATTGCAAAGACTTAATGCAATTTGCTCTTGACAGCCTCGAATCATCGGCTAATTTGGTTCGCGATAACAACATTCAAGCCATTCATGATCAAACACCTGATTTTAGGAATTGGTTGAGTGCTGTTATCTCATACCAACAATCATGCATGGACGGATTTGATAACGGAACGGACGGTGAGGATCAAGTAAAGAAACAATTGCAAACAGAAAGTTTGGACCAAATGGAGAAACTAACCGGCATTACACTTGACATTGTAACTAGCATGTCTAACATCCTTCAAACCTTCGACTTGAAGTTGGATTTGAATCCAGCTTCTCGTCGTCTTATGGAGGCTAATGAGATTGATGATGAAGGATTGCCCAAGTGGTTCTCGGCTGCAGATCGTAAGCTATTGGCAAACGCTGGTGGAGGTCCTCCACCAAACGCAGTAGTTGCTAAAGATGGTAGTGGTAAATTTAAAACAGTTAAAGAAGCTATTGACTCTTATCCTAAGGGATTCAAAGGCAGATACATTATCTATGTCAAGGCTGGGGTCTATGACGAGTACATCACCATTCCCAAAACATCAATAAATATTCTTATGTATGGCGACGGTCCTACAAAGTCCATTATCACTGGTCACAAAAACTTCGTCGACGGCGTTAAGACAATGCAAACTGCCACTTTTGCAAATGTTGCAAATGGATTCATTGCAAAGTCAATCGCATTCGAGAACACAGCTGGACCAGCAAAGCACCAAGCAGTGGCATTTAGAAACCAAGGAGACATGTCTGCTTTCTTCGATTGCGCCATGCATGGTTTCCAGGACACATTATACGTCCAAGCCAATCGTCAATTCTACCGCAACTGCGAAATCTCTGGTACCATAGACTTCATATTCGGCTCATCACCAACCCTAATTCAAAACTCTAGAATCATTGTGCGAAAGCCAGGACCTAGTCAATTCAACACCGTAACCGCAGACGGAACAAAACAACGAAACATGGCCACAGGAATAGTAATCCAGAATTGCGAAATTGTTCCAGATAGGGATTTGTTCCCAGTTAGGAACCAAGTCAAATCGTATTTGGGCAGACCATGGAAGGACTTTGCTAAGACAGTGTTTATGGAATCTAATATTGGTGATGTCATTGCACCAGAAGGGTGGACTCCATGGGCTGGGACTCAATTTCTTGATACATTGTATTATGCTGAATTTGCCAATACTGGACCTGGTGCTAATCTTAATGCAAGGGTTAAGTGGAAAGGTTATCATCCTCAGATTTCTAAGAATGAAGCTACTCAATTCACTGCAGCGAATTTCCTTAAAGCTGGACCTGGTGGAAAAGCTGATGATTGGCTGAAGGCTACTGGTATTCCTTATGCTATTGGATTTGAAAAAGCTTGA 1719 0.4229 MNGKILVSGVSIILVVGVAIGVVVVVNKKDDPALAAHEKNVQTMCQTTEDQKLCHDTLGSVKPANSSDPTAYLAAAVQASAQSVILALNMSDKLTVEHGKDKPGVKMALDDCKDLMQFALDSLESSANLVRDNNIQAIHDQTPDFRNWLSAVISYQQSCMDGFDNGTDGEDQVKKQLQTESLDQMEKLTGITLDIVTSMSNILQTFDLKLDLNPASRRLMEANEIDDEGLPKWFSAADRKLLANAGGGPPPNAVVAKDGSGKFKTVKEAIDSYPKGFKGRYIIYVKAGVYDEYITIPKTSINILMYGDGPTKSIITGHKNFVDGVKTMQTATFANVANGFIAKSIAFENTAGPAKHQAVAFRNQGDMSAFFDCAMHGFQDTLYVQANRQFYRNCEISGTIDFIFGSSPTLIQNSRIIVRKPGPSQFNTVTADGTKQRNMATGIVIQNCEIVPDRDLFPVRNQVKSYLGRPWKDFAKTVFMESNIGDVIAPEGWTPWAGTQFLDTLYYAEFANTGPGANLNARVKWKGYHPQISKNEATQFTAANFLKAGPGGKADDWLKATGIPYAIGFEKA* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3108 572 Gene3D - 250 569 IPR012334 -
Mtr1g3108 572 SMART PMEI_2 36 195 IPR006501 GO:0004857
Mtr1g3108 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 200 IPR035513 -
Mtr1g3108 572 PANTHER PECTINESTERASE 3 570 - -
Mtr1g3108 572 SUPERFAMILY Pectin lyase-like 248 567 IPR011050 -
Mtr1g3108 572 CDD PMEI-like_3 43 201 - -
Mtr1g3108 572 Pfam Pectinesterase 252 547 IPR000070 GO:0030599|GO:0042545
Mtr1g3108 572 PANTHER PECTINESTERASE 3 570 - -
Mtr1g3108 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 198 IPR006501 GO:0004857
Mtr1g3108 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 200 IPR035513 -
Mtr1g3108 572 Pfam Plant invertase/pectin methylesterase inhibitor 40 195 IPR006501 GO:0004857
Mtr1g3108 572 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3108 Mtr-Chr1 42376317 42380339 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3108 1 569 Carbohydrate Esterase AT2G47030 41.475 1.14e-141 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3108 K01051 - gmx:100775246 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3108 1 42376317 42380339 Mtr1g3108 1 42376317 42380339 ECH
Mtr7g3529 7 52297113 52298371 Mtr1g3108 1 42376317 42380339 PCT