Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3107 ATGGAAAGAAAAATATTTGTCTCTGGTGTTTCTCTCATTCTTGTTGTAGGTGTTGCCTTAGGTGTTGTTGCTCTTGTCCGAACCAACAATGGTCCCGCAGATGCTAACAACGGCGGTGAACTGACCTCGCATACTAAAGCTGTTACAGCTGTGTGTCAAAACAGCGATGACCACAAATTTTGTGCTGATACTCTTGGTTCTGTTAACACCTCAGACCCAAATGATTACATAAAAGCAGTGGTAAAAACTTCTATTGAAAGTGTCATCAAAGCCTTCAATATGACCGATAAGCTCGCGGTTGAAAACGAAAAAAATAACCAAAGTACTAAAATGGCACTTGATGATTGCAAAGACTTATTAGAATTCGCGATTGATGAATTACAAGCCTCGAGTATTTTAGCTGCTGATAACAGCAGCGTTCACAATGTTAATGACCGCGCTGCTGACCTTAAAAATTGGTTAGGTGCTGTTTTTGCCTACCAACAATCATGTCTTGACGGTTTTGATACAGATGGCGAAAAGCAGGTTCAATCACAATTGCAAACAGGTAGTTTGGATCATGTAGGAAAACTTACCGCGTTAGCACTTGATGTTGTGACTGCGATTACAAAAGTACTCGCTGCACTTGACTTGGATTTGAATGTGAAACCTTCATCTAGACGGCTTTTTGAGGTGGATGAAGACGGTAATCCAGAATGGATGTCCGGTGCAGATCGTAAGTTGTTGGCTGATATGAGTACTGGGATGTCTGTTACTCCTAATGCGGTTGTTGCGAAAGATGGTAGCGGCAAATTTAAAACGGTTCTTGATGCTATTAATTCTTACCCCAAAAATCATCAAGGTAGATATGTCATCTACGTCAAGGCTGGTGTCTATGACGAATATATTCAGATTGACAAAACTAAGAAGAATATTTTGATATACGGCGATGGCCCTACAAAGACCATTATCACTGGTAAAAAGAATTTTGTAGATGGTGTGAAGACTATACAAACTGCTACATTCTGTAAGTCCTTCTCAATAGATTTAAACAATAATGAATTATATTATAGTTAA 1056 0.392 MERKIFVSGVSLILVVGVALGVVALVRTNNGPADANNGGELTSHTKAVTAVCQNSDDHKFCADTLGSVNTSDPNDYIKAVVKTSIESVIKAFNMTDKLAVENEKNNQSTKMALDDCKDLLEFAIDELQASSILAADNSSVHNVNDRAADLKNWLGAVFAYQQSCLDGFDTDGEKQVQSQLQTGSLDHVGKLTALALDVVTAITKVLAALDLDLNVKPSSRRLFEVDEDGNPEWMSGADRKLLADMSTGMSVTPNAVVAKDGSGKFKTVLDAINSYPKNHQGRYVIYVKAGVYDEYIQIDKTKKNILIYGDGPTKTIITGKKNFVDGVKTIQTATFCKSFSIDLNNNELYYS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3107 351 Pfam Plant invertase/pectin methylesterase inhibitor 47 197 IPR006501 GO:0004857
Mtr1g3107 351 Pfam Pectinesterase 254 337 IPR000070 GO:0030599|GO:0042545
Mtr1g3107 351 PANTHER PECTINESTERASE 5 336 - -
Mtr1g3107 351 SMART PMEI_2 43 198 IPR006501 GO:0004857
Mtr1g3107 351 CDD PMEI-like_3 50 204 - -
Mtr1g3107 351 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 203 IPR035513 -
Mtr1g3107 351 PANTHER PECTINESTERASE 5 336 - -
Mtr1g3107 351 TIGRFAM PME_inhib: pectinesterase inhibitor domain 42 181 IPR006501 GO:0004857
Mtr1g3107 351 Gene3D - 248 347 IPR012334 -
Mtr1g3107 351 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 202 IPR035513 -
Mtr1g3107 351 SUPERFAMILY Pectin lyase-like 251 336 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3107 Mtr-Chr1 42372490 42373725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3107 4 318 Carbohydrate Esterase AT3G62170 33.528 1.68e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3107 K01051 - gmx:100820142 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3532 7 52324186 52326151 Mtr1g3107 1 42372490 42373725 PCT
Mtr1g3107 1 42372490 42373725 Mtr7g3529 7 52297113 52298371 PCT