Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3106 ATGTCATTATGGAGGCCTATTAAACCTTTATACTGTGGCCATATTCCTACTGTCGCGGAAGGTTTCATCGCAAAGGCAATGGCATTTGAGAACACAGCCGGAGCAAACAAACACCAAGCAGTAGCACTTCGCGTGCAAGGCGATAAATCAGCTTTCTTCGATTGTGCCATACGAGGTTACCAAGACACATTGTACGCACACGCCCACCGTCAATTCTACAGAAACTGCGAAATTTCAGGCACAGTGGATTTCATTTTCGGCTATGCATCAACAGTAATACAGAACTCAAAGATAGTAGTGCGAAAACCCGAGGCAAATCAACAAAACATAATTGTAGCTGATGGAACAGTCCAAAAGAACATGCCAACAGGAGTAGTACTTCAGAATTGTGAAATCATGCCAGAGCCAGCACTACAACCTGATAGATTGAAGGTTCGATCGTTTTTAGCAAGACCATGGAAGGCATATTCTAGGGCAATATTTATGGAAAATACCATTGGTGATTTAATTCAACCAGATGGATTTCTTCCTTGGGCAGGGACTCAATTCCTTGATACATGTTTCTTTGCTGAGTATGCTAACACTGGACCAGGTTCAAATGTTCAAGCAAGAGTTAAGTGGGGAAAGGGTGTTCTTAGCAAAGCTGATGCAACTAAATATACTGCTGCTCAATGGATTGAAGGTGGTGTATGGTTGCCTGCCACTGGTATACCCTTTGATCTTGGATTCACTAAAGGTTGA 741 0.4265 MSLWRPIKPLYCGHIPTVAEGFIAKAMAFENTAGANKHQAVALRVQGDKSAFFDCAIRGYQDTLYAHAHRQFYRNCEISGTVDFIFGYASTVIQNSKIVVRKPEANQQNIIVADGTVQKNMPTGVVLQNCEIMPEPALQPDRLKVRSFLARPWKAYSRAIFMENTIGDLIQPDGFLPWAGTQFLDTCFFAEYANTGPGSNVQARVKWGKGVLSKADATKYTAAQWIEGGVWLPATGIPFDLGFTKG* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3106 246 Pfam Pectinesterase 16 228 IPR000070 GO:0030599|GO:0042545
Mtr1g3106 246 ProSitePatterns Pectinesterase signature 2. 78 87 IPR033131 -
Mtr1g3106 246 PANTHER PECTINESTERASE 8 244 - -
Mtr1g3106 246 Gene3D - 13 243 IPR012334 -
Mtr1g3106 246 SUPERFAMILY Pectin lyase-like 17 241 IPR011050 -
Mtr1g3106 246 PANTHER PECTINESTERASE 8 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3106 Mtr-Chr1 42371715 42372541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3106 7 239 Carbohydrate Esterase AT5G49180 49.145 1.49e-76 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3106 K01051 - gmx:100820142 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3106 1 42371715 42372541 Mtr7g3532 7 52324186 52326151 PCT