Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3104 ATGGGTGTGGAGATTGAGAATGATTTTGTTGATGAAGCAACAACGTCAGAGAATAATCGTACAGAAACAAGTACAAATGCTACTACAAACGGCGAAAAGGACATAACAAAAGAAAAACAAGAGACAGTACCATTTCACAAATTATTCTCTTTTGCAGATTCCACTGACATTCTGTTAATGATTGTTGGTACTATTGGTGCTATTGGAAATGGTTTGGGTTTACCTATCATGACAGTGCTCCTCGGTCAAATGATTCATAGTTTCGGTAGTAACCAAACTAACACCGAGGACATTGTTGACCAAGTGACCAAGGTTTCTTTGAAATATGTATATTTGGCAGTAGGATCTGGGGTGGCAGCATTTCTTCAGGTGAGTTGTTGGATGGTTACAGGAGAAAGACAAGCTGCAAGAATAAGAGGATTGTATTTGAAAACAATATTAAGACAAGATGTTACTTTCTTTGATAAAGAAACAAACACAGGAGAAGTTATAGGGAGAATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTTGGGAAATTTCTGCAGCTAATAGCAACATTTGTTGGCGGTTTTGTGATAGCATTTACCAGAGGATGGCTTCTTACTGTTGTATTGATGTCAACACTTCCACTTCTTGTTGTGTCGGGTGCTGCCATGGCTGTAATCATAGGCAGGATGGCTTCTAAAGGTCAAACTGCTTATGCAAAAGCTGCGCATGTTGTTGAACAGACAATTGGCTCAATAAGAACGGTTGCTTCCTTTACTGGTGAAAAGCAAGCAGTAGCTAATTACAGCAAACATCTTGTAGATGGTTACAAATCAGGAGTTTTTGAAGGTTTTATATCTGGAGTAGGTGTAGGCACATTTATGTTTCTTATGTTCCTAGGTTATGCTTTGGCTGTATGGTTTGGTGCAAAGATGGTCATGGAAAAAGGATATAATGGAGGCACGGTGATTAATGTGATTATGGTCGTGTTAACTGCTTCCATGTCTCTTGGCCAGGCATCATCTGGTTTGAGTGCTTTTGCGGCAGGTCGGGCGGCGGCTTACAAAATGTTTGAGACAATTAAAAGGAGGCCAGAGATAGATGCTTATGATCCAAATGGAAAAATATTAGAGGATATTCAAGGTGAAATAGAGTTGAAAGAAGTTTATTTCAGTTATCCGGCAAGACCTGAGGAGCTGATATTTAATGGATTCTCTCTTCATATACCGAGCGGAACAACCACAGCATTGGTTGGACAAAGTGGAAGTGGAAAGTCGACAATTATCAGTTTGGTAGAGAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATCGATGGAATTAACATGAAAGAATTTCAGGTCAGGTGGATCAGAGGGAAAATTGGTCTTGTTAGCCAGGAGCCAGTGTTGTTTGCATCCAGCATTAAGGATAACATTTCATATGGTAAAGATGGAGCAACGATTGAAGAGATAAGATCTGCATCTGAACTTGCAAACGCTGCCAAATTCATTGATAAACTGCCCCAGGGGTTGGACACAATGGTTGGTGACCATGGAAGTCAGCTTTCTGGTGGGCAGAAGCAGCGCATTGCCATTGCAAGAGCAATACTTAAGAATCCAAGAATTTTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAAAATCTGAAAGGGTAGTACAAGAGACTCTTGATAGGATCATGGTCAACAGAACCACGGTTGTTGTTGCACATCGCTTGAGCACCGTGAGGAATGCCGACATGATTGCTATAATCCATAGAGGGAAAATGGTTTCGAAAGGAACACACACAGAACTACTCAAGGATCCTGAAGGAGCTTATTCTCAACTCGTACGCTTACAAGAAATAAACAAGGAATCAGAAGAAACTACGGATCACCATATCAAGAGAGAACTTTCTGCCAAATCATTTAGACAGTTGAGTCAAAGAAAGTCGCTTCAAAGATCTATTAGTAGGGGATCATCTATAGGGAATAGTAGTCGCCATTCATTTTCAGTTTCATCCGTTTTACCAACAGGAATTAACGCCATTGATCCGGGACTTGAGAATTTACCAACCAAAGAAAAAGGACAAGAAGTTCCGCTAAGCCGCCTTGCTACCCTCAACAAGCCAGAGATTCCAGTTCTGCTTTTCGGATGTTTTGCTGCCATAGGAAACGGTGTCATATTTCCAATATTTGGCATTCTGACTTCTAGTATGATCAAAACATTTTATGAACCGTTTGATGAGATGAAAAAGGACTCCAAGTTTTGGGCAGTAATGTTTATGCTCCTTGGTTTTGCATCATTGCTGGTGGTTACTGCACAATCTTACTTTTTCTCTGTGGCTGGGTACAAGTTAATCCAACGTATCAGACTACTATGTTTTGAGAAGGTGGTGAGCATGGAGGTTGGTTGGTTCGATGAGCCTGAAAACTCGAGCGGCTCAGTAGGTGCAAGGCTCTCGGCAGATGCTGCTTCAGTGCGTACAATTGTTGGTGATGCGCTAGGACTGTTGGTTATGAATTTGGCAGCTGCATTGTCTGGTTTGATTATTGCTTTCGTTGCGAGCTGGCAGCTTGCGTTGATTATCCTTGTGTTGATTCCTCTCATTGGATTAAATGGATATGTTCAAATGAAATCCATGAAGGGATTCAGCGCAGACGCAAAGATGATGTATGAGGAGGCTAGTCAAGTTGCAAATGATGCAGTGGGAAGTATAAGAATTGTGGCTTCTTTCTGTGCTGAAAATAAGGTTATGGAATTATATAGGAAGAAATGTGAAGTTCCCATGAAAACAGGGATAAGGCAAGGGATAATCAGTGGATCAGGATTCGGTGTTTCATTTTTCTTATTGTTTTGTGTCTATGCGTTAAGTTTCTACGCTGGAGCTAGACTTGTGGAATCCGGGCATACAAAATTTTCTGATGTTTTTCGGGTTTTCTTTGCGTTAACAATGGCAACTGTTGGTATTTCTCAGTCAAGTTCCTTTGCTCCTGACTCCAGTAAAGCAAAGTCGGCTACTGCTTCCATATTTAGAATGATTGATAAGAAATCAAAAATAGATCCAAGTGATGAATCTGGTACCACTTTAGACAGTGTTAAGGGTGAAATTGAGCTTCGTCATCTTAGCTTTAAGTATCCATCTAGACCTGATATTCAGATTTTCCAAGACCTCAACTTGACCATCCATTCTGGCAAGACGGTAGCACTTGTCGGTGAAAGTGGAAGTGGGAAATCGACTGTGATTGCTTTGTTACAAAGATTTTATGATCCTGATTCAGGTGAAATCACACTTGATGGGATAGAAATTCGTCAGTTACAGTTAAAGTGGTTAAGGCAGCAAATGGGTCTTGTGAGCCAAGAACCAGTATTATTCAATGACACTATTCGTTCCAATATTGCCTATGGAAAAGGTGGCAATGCAACTGAGGCAGAAATCATTGCTGCTGCTGAATTGGCCAATGCAGATAGATTCATTAGTGGCTTACAGCAGGGTTATGATACAATAGTGGGAGAGAGAGGAACTCAATTATCAGGTGGACAGAAGCAAAGGGTAGCTATTGCACGTGCAATAATCAAAAGTCCAAAGATTTTGTTACTTGATGAGGCAACAAGTGCATTAGATGCAGAATCAGAGAGAGTTGTTCAAGATGCATTAGACAAAGTGATGGTAAATAGGACCACTGTGGTTGTGGCACATCGTTTATCTACAGTTAAAAATGCAGATGTTATTGCTGTTGTCAAGAATGGAGTTATAGTTGAAAAAGGAAGACATGAAACACTTATTAATGTTTAA 3801 0.4057 MGVEIENDFVDEATTSENNRTETSTNATTNGEKDITKEKQETVPFHKLFSFADSTDILLMIVGTIGAIGNGLGLPIMTVLLGQMIHSFGSNQTNTEDIVDQVTKVSLKYVYLAVGSGVAAFLQVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLIATFVGGFVIAFTRGWLLTVVLMSTLPLLVVSGAAMAVIIGRMASKGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVANYSKHLVDGYKSGVFEGFISGVGVGTFMFLMFLGYALAVWFGAKMVMEKGYNGGTVINVIMVVLTASMSLGQASSGLSAFAAGRAAAYKMFETIKRRPEIDAYDPNGKILEDIQGEIELKEVYFSYPARPEELIFNGFSLHIPSGTTTALVGQSGSGKSTIISLVERFYDPQAGEVLIDGINMKEFQVRWIRGKIGLVSQEPVLFASSIKDNISYGKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGDHGSQLSGGQKQRIAIARAILKNPRILLLDEATSALDAKSERVVQETLDRIMVNRTTVVVAHRLSTVRNADMIAIIHRGKMVSKGTHTELLKDPEGAYSQLVRLQEINKESEETTDHHIKRELSAKSFRQLSQRKSLQRSISRGSSIGNSSRHSFSVSSVLPTGINAIDPGLENLPTKEKGQEVPLSRLATLNKPEIPVLLFGCFAAIGNGVIFPIFGILTSSMIKTFYEPFDEMKKDSKFWAVMFMLLGFASLLVVTAQSYFFSVAGYKLIQRIRLLCFEKVVSMEVGWFDEPENSSGSVGARLSADAASVRTIVGDALGLLVMNLAAALSGLIIAFVASWQLALIILVLIPLIGLNGYVQMKSMKGFSADAKMMYEEASQVANDAVGSIRIVASFCAENKVMELYRKKCEVPMKTGIRQGIISGSGFGVSFFLLFCVYALSFYAGARLVESGHTKFSDVFRVFFALTMATVGISQSSSFAPDSSKAKSATASIFRMIDKKSKIDPSDESGTTLDSVKGEIELRHLSFKYPSRPDIQIFQDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIRQLQLKWLRQQMGLVSQEPVLFNDTIRSNIAYGKGGNATEAEIIAAAELANADRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTVKNADVIAVVKNGVIVEKGRHETLINV* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3104 1266 Pfam ABC transporter transmembrane region 60 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3104 1266 Pfam ABC transporter transmembrane region 717 989 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3104 1266 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 9 1266 - -
Mtr1g3104 1266 CDD ABC_MTABC3_MDL1_MDL2 1039 1264 - -
Mtr1g3104 1266 Pfam ABC transporter 1058 1207 IPR003439 GO:0005524
Mtr1g3104 1266 Pfam ABC transporter 403 551 IPR003439 GO:0005524
Mtr1g3104 1266 MobiDBLite consensus disorder prediction 1 37 - -
Mtr1g3104 1266 PANTHER - 9 1266 - -
Mtr1g3104 1266 SMART AAA_5 1066 1259 IPR003593 -
Mtr1g3104 1266 SMART AAA_5 411 583 IPR003593 -
Mtr1g3104 1266 MobiDBLite consensus disorder prediction 12 31 - -
Mtr1g3104 1266 Gene3D ABC transporter type 1, transmembrane domain 107 1013 IPR036640 GO:0005524|GO:0016021
Mtr1g3104 1266 CDD ABC_6TM_Pgp_ABCB1_D1_like 60 345 - -
Mtr1g3104 1266 ProSitePatterns ABC transporters family signature. 523 537 IPR017871 GO:0005524
Mtr1g3104 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1039 1266 IPR003439 GO:0005524
Mtr1g3104 1266 CDD ABC_6TM_Pgp_ABCB1_D2_like 709 1022 - -
Mtr1g3104 1266 ProSitePatterns ABC transporters family signature. 1179 1193 IPR017871 GO:0005524
Mtr1g3104 1266 SUPERFAMILY ABC transporter transmembrane region 46 368 IPR036640 GO:0005524|GO:0016021
Mtr1g3104 1266 Gene3D - 382 635 IPR027417 -
Mtr1g3104 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 622 IPR027417 -
Mtr1g3104 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 349 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3104 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 620 IPR003439 GO:0005524
Mtr1g3104 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 718 1004 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3104 1266 SUPERFAMILY ABC transporter transmembrane region 705 1023 IPR036640 GO:0005524|GO:0016021
Mtr1g3104 1266 CDD ABC_MTABC3_MDL1_MDL2 384 622 - -
Mtr1g3104 1266 Gene3D - 1029 1266 IPR027417 -
Mtr1g3104 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1029 1265 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3104 Mtr-Chr1 42351093 42359019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3104 108 622 Calmodulin-binding Proteins AT2G36910 39.655 1.96e-112 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3104 K05658 - gmx:100777909 2005.72