Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3102 ATGGGTAAGGTGAATGGGGTTGATGAGATAGAGAATAATCATGATGAAGCAACAACGTCAGAGAAAAATTCAACAGAAACAAGTAGTACAAATGTTGTTACAAACGGCGAAAAGGACAAAACAAAAGAAAAACAAGAGACAGTTCCATTTCACAAACTATTCACTTTTGCAGATTCTACTGACATTTTATTAATGATTGTTGGTACTATCGGTGCTATTGGAAACGGTTTGGGTTTACCTCTTATGACATTATTGTTCGGTCAAATGATTGATAGTTTTGGTAGTAACCAAAGTAACACCACCGATGTTGTAGAACAAGTGTCCAAGGTGTCTTTGAAATTTGTATATTTGGCAGTAGGATCTGGGGTGGCAGCATTTCTCCAGGTGAGTTGTTGGATGGTAACAGGAGAAAGACAAGCTGCAAGAATAAGAGGATTGTATTTGAAAACAATATTAAGACAAGATGTTACTTTCTTTGATAAAGAAACAAACACAGGAGAAGTTGTAGGAAGAATGTCTGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTTGGGAAGTTTCTGCAGCTAATAGCAACATTTATTGGGGGTTTTGTGATAGCATTTACAAAAGGGTGGCTTCTTACTGTTGTTATGATGTCAACACTTCCATTTCTTGTTGTGTCAGGTGCTGCCATGGCTGTTATCATAGGCAGAATGGCTTCTAAAGGTCAAACTGCTTATGCAAAAGCTGCACATGTTGTTGAACAGACCATTGGCTCAATAAGAACGGTTGCATCCTTTACTGGGGAAAAGCAAGCAGTATCTAGTTATAGCAAATTTCTTGTAGATGCTTACAAATCAGGAGTTTTTGAAGGTACTATAGCTGGAGCAGGACTAGGCACAGTTATGTTTGTTATTTTCTGTGGTTATGCTTTGGCAGTATGGTTTGGTGCAAAGATGATCATTGAAAAAGGATATAATGGTGGCACCGTGATTAATGTGATTATCGCCGTGTTAACAGCTTCCATGTCTCTTGGCCAGGCATCACCAAGTATGAGTGCTTTTGCGGCGGGTCAGGCGGCGGCTTACAAAATGTTTGAGACAATTAAAAGGAGGCCAGAGATAGATGCTTATGATCCAAATGGAAAAATATTAGAGGATATTCAAGGTGAGATAGAGTTGAAAGAAGTTTATTTCAGTTATCCGGCAAGACCTGAGGAGCTGATATTCAATGGATTCTCTCTTCATATATCAAGCGGAACAACCGCGGCATTGGTTGGACAAAGTGGAAGTGGAAAGTCCACAGTTATTAGTTTGGTAGAAAGATTCTATGATCCACAGGCCGGTGAAGTACTTATCGATGGAATTAACATGAAAGAACTTCAGCTTAGGTGGATCAGAGGGAAAATTGGTCTTGTCAGCCAGGAGCCAGTGTTATTTGCATCCAGCATTAAGGATAACATTGCATATGGTAAAGATGGAGCAACAATTGAAGAAATAAGATCTGCATCCGAACTTGCAAACGCCGCCAAATTCATTGATAAACTTCCACAGGGATTGGACACAATGGTTGGTGACCATGGAACTCAACTGTCTGGTGGACAGAAGCAGCGCATTGCGATTGCAAGAGCAATCCTTAAGAATCCAAGAATTCTACTTCTTGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGGGTGGTGCAAGAGGCTCTGGATAGAATCATGGTCAACAGAACCACAGTTGTCGTTGCACATCGCTTAAGCACAGTGAGGAATGCTGACATGATTGCTGTAATCCATAGAGGGAAAATGGTTGAGAAAGGAACACACTCTGAATTACTGAAGGATCCTGAAGGAGCTTATTCACAGCTCATACGGTTACAAGAAGTAAACAAGGAATCAGAAGAAACTACAGACCATCACGGTAAGAGAGAACTTTCTGCAGAGTCTTTTAGACAGTCAAGTCAAAGGAAGTCGCTTCAAAGATCTATAAGTAGGGGATCATCTATAGGGAATAGTAGTCGCCATTCATTTTCGGTTTCGTTCGGTTTACCAACAGGAGTTAATGTCGCCGATCCTGACCTTGAAAAAGTTCCAACCAAAGAAAAAGAACAAGAAGTTCCGCTGAGACGCCTTGCTTCCCTTAACAAGCCAGAGATTCCCGTTCTTCTTATTGGAAGTTTAGCTGCCATAGCTAACGGTGTCATACTTCCAATATTCGGCGTTTTGATCTCCAGTGTCATCAAAACATTTTATGAACCGTTTGATGAGATGAAGAAGGACTCCAAGTTTTGGGCGATAATGTTTATGCTCCTTGGTCTTGCATCATTGGTGGTGATTCCAGCGAGAGGTTACTTTTTCTCTGTGGCTGGATGCAAGTTAATCCAACGGATCAGGCTACTATGTTTTGAGAAGGTTGTGAATATGGAGGTTGGTTGGTTCGATGAGCCTGAAAACTCGAGTGGCGCAGTTGGTGCAAGGCTCTCGGCAGATGCTGCTTCCGTACGTGCCCTTGTTGGCGATGCACTTGGACTGTTGGTTCAGAATTTGGCATCTGCATTGGCTGGTTTGATTATTGCTTTCATTGCGAGCTGGCAGCTGGCGCTGATTATTCTTGTGTTGATTCCTCTTATTGGATTAAATGGATATGTTCAAATGAAGTTCATGAAGGGATTCAGCGGAGACGCAAAGATGATGTACGAGGAGGCTAGTCAAGTTGCGAATGATGCAGTTGGAAGCATAAGAACTGTGGCTTCTTTCTGTGCAGAAGATAAGGTTATGGAACTATATAGGAAGAAATGTGAAGGTCCCATGAAAACAGGAATAAGGCAAGGGATAATCAGTGGATCAGGATTCGGTGTTTCATTTTTCTTATTGTTTAGTGTCTATGCAACCAGTTTCTACGCAGGAGCTAGACTTGTGAAAGCTGGGAATACAACTTTTTCAGATGTTTTCCGGGTTTTCTTCGCGTTAACTATGGCAGCTATTGGTATTTCACAGTCAAGTTCCTTTGCTCCTGACTCCAGTAAAGCAAAGTCAGCTACTGCTTCTATATTTGGAATGATTGATAAGAAGTCAAAGATTGATCCAAGTGAAGAGTCTGGTACCACTCTAGATAGCATTAAAGGCGAAATTGAGCTTCGCCATATAAGCTTTAAGTATCCATCTCGGCCTGATATTCAGATTTTCCGAGACCTCAACTTGACTATCCACTCTGGCAAGACGGTAGCACTTGTCGGTGAAAGTGGAAGTGGGAAATCGACTGTGATTGCTTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGAAATCACACTTGATGGGATAGAAATTCGTCAGTTACAGTTAAAGTGGTTAAGGCAGCAAATGGGTCTTGTAAGCCAAGAACCAGTCTTATTCAATGACACTATTCGTGCCAATATTGCTTATGGCAAAGGTGGCATTGCAACTGAGGCAGAAATCATTGCTGCTGCTGAATTGGCTAATGCTCATAGGTTCATCAGTGGCTTACAACAGGGCTATGATACAATAGTGGGAGAGAGAGGAACTCAACTATCAGGTGGGCAGAAACAAAGGGTGGCTATTGCACGTGCAATAATCAAAAGTCCAAAGATTTTGTTACTTGATGAGGCAACAAGTGCATTAGATGCAGAATCAGAGAGAGTTGTTCAAGATGCATTAGATAAAGTAATGGTAAATAGGACCACTGTGGTTGTGGCACATCGTTTGTCTACAATTAAAAATGCAGATGTTATTGCTGTTGTCAAGAATGGTGTTATAGTTGAAAAAGGAAGACATGAAACACTTATTAACGTTAAAGATGGATTTTATGCTTCCTTAGTCCAACTTCATACTAGTGCTAAAACAGTATAG 3870 0.4109 MGKVNGVDEIENNHDEATTSEKNSTETSSTNVVTNGEKDKTKEKQETVPFHKLFTFADSTDILLMIVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQSNTTDVVEQVSKVSLKFVYLAVGSGVAAFLQVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFTKGWLLTVVMMSTLPFLVVSGAAMAVIIGRMASKGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVFEGTIAGAGLGTVMFVIFCGYALAVWFGAKMIIEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFETIKRRPEIDAYDPNGKILEDIQGEIELKEVYFSYPARPEELIFNGFSLHISSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINMKELQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGDHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEVNKESEETTDHHGKRELSAESFRQSSQRKSLQRSISRGSSIGNSSRHSFSVSFGLPTGVNVADPDLEKVPTKEKEQEVPLRRLASLNKPEIPVLLIGSLAAIANGVILPIFGVLISSVIKTFYEPFDEMKKDSKFWAIMFMLLGLASLVVIPARGYFFSVAGCKLIQRIRLLCFEKVVNMEVGWFDEPENSSGAVGARLSADAASVRALVGDALGLLVQNLASALAGLIIAFIASWQLALIILVLIPLIGLNGYVQMKFMKGFSGDAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGIISGSGFGVSFFLLFSVYATSFYAGARLVKAGNTTFSDVFRVFFALTMAAIGISQSSSFAPDSSKAKSATASIFGMIDKKSKIDPSEESGTTLDSIKGEIELRHISFKYPSRPDIQIFRDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGIATEAEIIAAAELANAHRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINVKDGFYASLVQLHTSAKTV* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3102 1289 PANTHER - 16 1285 - -
Mtr1g3102 1289 MobiDBLite consensus disorder prediction 630 650 - -
Mtr1g3102 1289 SUPERFAMILY ABC transporter transmembrane region 51 373 IPR036640 GO:0005524|GO:0016021
Mtr1g3102 1289 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 66 354 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3102 1289 MobiDBLite consensus disorder prediction 630 674 - -
Mtr1g3102 1289 Gene3D ABC transporter type 1, transmembrane domain 112 1018 IPR036640 GO:0005524|GO:0016021
Mtr1g3102 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1034 1282 IPR027417 -
Mtr1g3102 1289 CDD ABC_6TM_Pgp_ABCB1_D1_like 65 350 - -
Mtr1g3102 1289 SMART AAA_5 416 602 IPR003593 -
Mtr1g3102 1289 SMART AAA_5 1071 1264 IPR003593 -
Mtr1g3102 1289 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 16 1285 - -
Mtr1g3102 1289 Gene3D - 387 644 IPR027417 -
Mtr1g3102 1289 ProSitePatterns ABC transporters family signature. 528 542 IPR017871 GO:0005524
Mtr1g3102 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 627 IPR027417 -
Mtr1g3102 1289 CDD ABC_MTABC3_MDL1_MDL2 1044 1282 - -
Mtr1g3102 1289 Pfam ABC transporter 1063 1212 IPR003439 GO:0005524
Mtr1g3102 1289 Pfam ABC transporter 408 556 IPR003439 GO:0005524
Mtr1g3102 1289 CDD ABC_MTABC3_MDL1_MDL2 389 627 - -
Mtr1g3102 1289 Gene3D - 1034 1288 IPR027417 -
Mtr1g3102 1289 SUPERFAMILY ABC transporter transmembrane region 703 1024 IPR036640 GO:0005524|GO:0016021
Mtr1g3102 1289 MobiDBLite consensus disorder prediction 651 674 - -
Mtr1g3102 1289 ProSitePatterns ABC transporters family signature. 1184 1198 IPR017871 GO:0005524
Mtr1g3102 1289 Pfam ABC transporter transmembrane region 65 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3102 1289 Pfam ABC transporter transmembrane region 722 994 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3102 1289 CDD ABC_6TM_Pgp_ABCB1_D2_like 712 1027 - -
Mtr1g3102 1289 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 389 625 IPR003439 GO:0005524
Mtr1g3102 1289 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1044 1281 IPR003439 GO:0005524
Mtr1g3102 1289 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 723 1009 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3102 1289 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3102 Mtr-Chr1 42333792 42340663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3102 38 1288 Calmodulin-binding Proteins AT2G36910 45.807 0.0 1092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3102 1 42333792 42340663 Mtr1g3102 1 42333792 42340663 ECH