Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3096 ATGCCTTCATCGTCCGATACTAATAAAAGGTTGAAGAAAGGAACATTATGGTCAAAAGAAGAGGATGAAATATTAAAAGCATATGTTGAAAAACATGGAACCGGAAATTGGAAAGAGGTATCAAAGAACACGGGACTTGCACACTGTGGAAACAGTTGCCGTTTTAGATGGTATAATACTCTACGACCTGATTTAAGAAAGGGTCCATTTAGCAAAGAAGAAGAAGAAAAATTCTTTGAGTTATTTTCTAAGTTTGGTGAGTTCAAATGGTCTAAGATGGCTCTCGAGATGCCTGGAAGAACCGATAATGACATCAAGAACTTTTGGAACGCAAGAAAAAGAAAACATCAAAGACATTGCTTGTCACCCTTCCCTGACAACAACATGGAACTGGTTGATGGTTTGAATAGTAGTAATGGAAAAAGAATAAGGAATTCACAAGAAAACAAATTTAAGATACCAGAAGTAATTAAATTTGGTAATCAAATTCTGCATACAAACTTATTTGATGATTCAAATATGTTCTTCAATAATGTGGGAAGTACTTCTACATGCAATCATACTACTTCTACATTGATTGATAGGGATGGCGTTGGAACTTCTACTATATCCATTCCAAATATGGGCTATCCTCAGAATCCACAACCTATGGAGACTCAATATCAGTTGTCACAATCAATTTCTCCATATAAAAGTGGTTCATTGGAGTCTATGTTATATACACAAGAGAATTGGGAAAGCTTGGATACTATTCGCATGCACTTTGAGACAAATTTGGTTGATGAGAAAGGGAAGAAGCAAATTTCTTCGGAGAGCGATGTTGAAGTAAACCATGACGACATAATGAATCCGGAACTTTGGGATGACATGTTCAGCACATTAGTGAATGACGATGACAATAACTTGCATGACAAGCTTCCATACGATGTTAGTGATGCCTTAGACACTTGCATGGCAATGCAGTCAGATCTGCCTCCACTCCCACTACCTATGGAGACTCAACATCAGATGTCAGAGATAAATAACTGGAAGAAGGCAATTGCTTTGGAGGAAGGTGTTGATGAAAACCAGATCATTTTCTTTGAGGATTACTTATACGGTTATTTGGTTTGA 1113 0.3702 MPSSSDTNKRLKKGTLWSKEEDEILKAYVEKHGTGNWKEVSKNTGLAHCGNSCRFRWYNTLRPDLRKGPFSKEEEEKFFELFSKFGEFKWSKMALEMPGRTDNDIKNFWNARKRKHQRHCLSPFPDNNMELVDGLNSSNGKRIRNSQENKFKIPEVIKFGNQILHTNLFDDSNMFFNNVGSTSTCNHTTSTLIDRDGVGTSTISIPNMGYPQNPQPMETQYQLSQSISPYKSGSLESMLYTQENWESLDTIRMHFETNLVDEKGKKQISSESDVEVNHDDIMNPELWDDMFSTLVNDDDNNLHDKLPYDVSDALDTCMAMQSDLPPLPLPMETQHQMSEINNWKKAIALEEGVDENQIIFFEDYLYGYLV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3096 370 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Mtr1g3096 370 ProSiteProfiles Myb-like domain profile. 17 61 IPR001005 -
Mtr1g3096 370 Pfam Myb-like DNA-binding domain 17 77 - -
Mtr1g3096 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 65 IPR017930 -
Mtr1g3096 370 SMART sant 66 115 IPR001005 -
Mtr1g3096 370 SMART sant 13 63 IPR001005 -
Mtr1g3096 370 Gene3D - 66 117 - -
Mtr1g3096 370 CDD SANT 17 61 IPR001005 -
Mtr1g3096 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 117 IPR017930 -
Mtr1g3096 370 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 157 - -
Mtr1g3096 370 Gene3D - 16 65 - -
Mtr1g3096 370 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 1 157 - -
Mtr1g3096 370 ProSiteProfiles Myb-like domain profile. 62 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3096 Mtr-Chr1 42258338 42259729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3096 3 156 MYB Transcription Factor Family AT2G26960 46.386 1.53e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g3096 Myb_DNA-bind_6 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3096 K09422 - mtr:MTR_1g085770 597.43