Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3092 ATGGGAAAAGGTTCCACTTCTTCTTCCTCCTCTTCCAACAGTAGAAGAAGGAAACATAATTCCTCTAATGTTTCATCCTCCATCACTCACCAAAATCCTGATCAACAACATCTTTTTCCTGATCTTAACCTTGGATTGAGCATTTCCACCACTCAACAATATGTTGATTATTCCACCTCAAGGGGACATTGGCAACCAATTCAGCAACAAGGTGGTGAAGTAAATGACTGCAGTGATTACAACAGTGCCTTCTTTGTGAAGGTTTACATGGAAGGCATTCCAATTGGGAGAAAGCTCAATTTGCTAGCTCATAATGGCTATCATGAGTTGGTTAATACACTTGAACAAATGTTTGATACTACCATTCTATGGGGGACTGAAATGGATGGAGTGCAATCAGAGAGATGTCATGTGTTAACTTATGAAGATGGAGAAGGAGACTTGATTATGGTTGGGGATGTCCCTTGGGAGATGTTCTTATCATCCGTGAAGAGGTTGAAGATCACAAGGGTTGATGCATTCGGGTTTTAA 531 0.4068 MGKGSTSSSSSSNSRRRKHNSSNVSSSITHQNPDQQHLFPDLNLGLSISTTQQYVDYSTSRGHWQPIQQQGGEVNDCSDYNSAFFVKVYMEGIPIGRKLNLLAHNGYHELVNTLEQMFDTTILWGTEMDGVQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGF* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3092 176 MobiDBLite consensus disorder prediction 1 40 - -
Mtr1g3092 176 ProSiteProfiles PB1 domain profile. 83 173 IPR000270 GO:0005515
Mtr1g3092 176 PANTHER AUXIN-INDUCED PROTEIN 2 175 - -
Mtr1g3092 176 Pfam AUX/IAA family 75 170 IPR033389 -
Mtr1g3092 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 175 IPR003311 GO:0005634|GO:0006355
Mtr1g3092 176 Gene3D - 78 175 - -
Mtr1g3092 176 SUPERFAMILY CAD & PB1 domains 79 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3092 Mtr-Chr1 42208232 42209572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3092 65 168 B3 DNA Binding Superfamily AT4G23980 32.692 7.83e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mtr1g3092 AUX_IAA 3.9e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3092 K14484 - gmx:100784866 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3092 1 42208232 42209572 Mtr1g3092 1 42208232 42209572 ECH
Mtr7g3542 7 52424143 52425173 Mtr1g3092 1 42208232 42209572 PCT