Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3088 ATGGGATATCTTATTGCTATTGCCATAGTGACTTTCACTATTATGATGATGTCAAAAATTTGGAGAGTTTGTGTAATTCTCTTCTGGAGACCATATGCAATGACTAGGCACTTTCGAAAGCAAGGAGTTATTGGACCACCTTACTCACTTGTTTCAGGTTCTCTTCATGATATCAAAACAATGATGAAGGATGCAAGGAATATGGTCATGGATAAACACTCAAACGATATTACTCAAAGGGTTCTTCCTCACTACCAAATATGGTCCTCCTTATATGGGGAGAGATTTCTATATTGGTACGGAACAGAACCGAGGATTTGCATCTCTGATGTAGAGCTGGCCAAAGAGATTTTATCAAATAAATTTGGTTTTTATGCAAAGCCTAAAACAAGGCCTTCGATAGTAACCATGATAGGAGAAGGTTTAGCAATTGTCAATGGAGTGGAATGGGTTAGGCGCAGAAGGATACTCAATCCTGCTTTCTCTATGGATAAACTCAAGGTTATGATAAGTAGAATGGCAGCATGTACCATTTCCATGCTAGAAGAGTGGAAAAAGCAAGCTATTGAAACAAAGGAGAAATCAAAGAAAATAGAGATGACTGAAGAATTTCGAGAGCTAACAGCAAATATAATTGCCCACACTGCCTTTGGTACCAGCTTTGTTCATGGAAGAGAAGCTTTTGATGCACAAACACAGCTTCATAAGCACTGCGTAGCTTCAAATTCCGACGTTTTCATTCCTGGCACTCAATATTTTCCTACTAAGTCAAATATTGAGATATGGAAGCTTGATAGAAAAATGAAGAAATCACTACAATGCATTATAGAAAGTAGGTTGCAAAATTCTCAATCAGATTGCTCTTATGGAGATGATCTACTAGGAGTAATGATGGATACAGAAAAAACAAATGATCATGGTTCTAAAAAATTGAAGATGAATGAAATCATGGATGAATGCAAGACCTTTTTCTTTGCTGGTCATGAAACCACTTCAAACTTACTTAATTGGACCGTCTTTTTGTTGAGTTTGCACAAGGATTGGCAAGACAAACTTAGACAAGAGGTTCAGCAGATTTGTGGCATGGAAATTCCTGACGCAGATATGCTATCCAAGTTAAAAATGGTGAATATGGTCTTGCTGGAAGCATTAAGGTTGTACTGTCCTGCAATACAACTAGAAAGAGTGGCTTCACAAGACATGAAATTAGGAAATTTGATAATCCCTCAAGGAACATGTCTCACAATCCCAATAACAATGATTCACACAAGTAAAAAATATTGGGGTGAAGATGCAAATGAGTTCAATCCAATGAGATTCATAAATGGAATATCTAAGGCCTCAAATCACCCAAATGCTCTACTTGCATTTTCTGTGGGTCCAAGAAATTGTATTGGTCAGAATTTTGCTATGTTGGAAGCAAAGACAGTGATGACTTTGATTCTTCAAAGGTTTTCTTGGTCTCTTTCCTCTGACTATGAACATGCACCTGTTAACAACCTCACTTTGCAACCACAACATGGACTTCCCATCATTATTAAACCACTGCAGTTATAA 1557 0.3738 MGYLIAIAIVTFTIMMMSKIWRVCVILFWRPYAMTRHFRKQGVIGPPYSLVSGSLHDIKTMMKDARNMVMDKHSNDITQRVLPHYQIWSSLYGERFLYWYGTEPRICISDVELAKEILSNKFGFYAKPKTRPSIVTMIGEGLAIVNGVEWVRRRRILNPAFSMDKLKVMISRMAACTISMLEEWKKQAIETKEKSKKIEMTEEFRELTANIIAHTAFGTSFVHGREAFDAQTQLHKHCVASNSDVFIPGTQYFPTKSNIEIWKLDRKMKKSLQCIIESRLQNSQSDCSYGDDLLGVMMDTEKTNDHGSKKLKMNEIMDECKTFFFAGHETTSNLLNWTVFLLSLHKDWQDKLRQEVQQICGMEIPDADMLSKLKMVNMVLLEALRLYCPAIQLERVASQDMKLGNLIIPQGTCLTIPITMIHTSKKYWGEDANEFNPMRFINGISKASNHPNALLAFSVGPRNCIGQNFAMLEAKTVMTLILQRFSWSLSSDYEHAPVNNLTLQPQHGLPIIIKPLQL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3088 518 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PRINTS E-class P450 group I signature 207 225 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PANTHER CYTOCHROME P450 FAMILY MEMBER 5 512 - -
Mtr1g3088 518 SUPERFAMILY Cytochrome P450 78 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PANTHER P450, PUTATIVE-RELATED 5 512 - -
Mtr1g3088 518 Pfam Cytochrome P450 91 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 Gene3D Cytochrome P450 28 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 PRINTS P450 superfamily signature 464 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3088 518 Coils Coil 181 201 - -
Mtr1g3088 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3088 Mtr-Chr1 42166264 42174067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3088 21 517 Cytochrome P450 AT2G46960 55.578 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3088 K20660 - aprc:113872106 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3088 1 42166264 42174067 Mtr1g3088 1 42166264 42174067 ECH