Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3087 ATGGGAAGGCACTCATGTTGTTACAAGCAGAAGCTTAGGAAAGGTCTATGGTCACCAGAAGAAGATGAAAAACTACTGAGGCATATAACAAAGTATGGTCATGGATGTTGGAGTTCAGTACCTAAGCAAGCAGGTTTGCAAAGATGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTCTCACAAGAGGAAGAAAATCTCATTGTTGAACTTCATGCAGTTCTGGGGAATAGATGGTCTCAAATTGCGGCGCAATTGCCGGGGAGGACTGACAATGAAATAAAGAATCTATGGAACTCTTGTTTGAAGAAGAGACTGAGGCAAAAAGAGATGAGAACTAGCAGCAGCAGCACCTTAAACTTACATAACAACAATTTTTCTTCTTGGGGAGGATTGATGGAAAATCATACAGAAGAAGCTAAGTGGGAAAATAATAATAGTAACTACTTTCAAAACCCTATCTTAATGCTTGCTTCTGAATCTTTATGCAATGAGATAAAGCCTCCATTGATGAACTTTGTACCAGATAGTTTTGGAGGTATTTTACCTCATACAAAGCAAGAACAAGAACAGTCACAAACAACTTCTAATATCTTTTCCAAGGACATTCAGAAACTAAGAGAAGCTTTTGGAGATATGTGA 672 0.3824 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQKEMRTSSSSTLNLHNNNFSSWGGLMENHTEEAKWENNNSNYFQNPILMLASESLCNEIKPPLMNFVPDSFGGILPHTKQEQEQSQTTSNIFSKDIQKLREAFGDM* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3087 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr1g3087 223 Gene3D - 11 67 - -
Mtr1g3087 223 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr1g3087 223 CDD SANT 17 61 IPR001005 -
Mtr1g3087 223 SMART sant 66 114 IPR001005 -
Mtr1g3087 223 SMART sant 13 63 IPR001005 -
Mtr1g3087 223 PANTHER MYB DOMAIN PROTEIN 55 1 194 - -
Mtr1g3087 223 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mtr1g3087 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr1g3087 223 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr1g3087 223 Gene3D - 69 136 - -
Mtr1g3087 223 CDD SANT 69 109 IPR001005 -
Mtr1g3087 223 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr1g3087 223 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mtr1g3087 223 PANTHER MYB DOMAIN PROTEIN 55 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3087 Mtr-Chr1 42142795 42144735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3087 1 117 MYB Transcription Factor Family AT4G01680 95.726 9.61e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g3087 Myb_DNA-binding 7.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3087 K09422 - atr:18430178 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3087 1 42142795 42144735 Mtr1g3057 1 41836037 41837970 ECH
Mtr1g3087 1 42142795 42144735 Mtr7g3567 7 52690356 52692311 ECH
Mtr1g3087 1 42142795 42144735 Mtr1g3087 1 42142795 42144735 ECH
Mtr7g3545 7 52452873 52454859 Mtr1g3087 1 42142795 42144735 PCT