Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3082 ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGCCCAGGGGAAGTCACATGTAGTCTGTAGCAGTACCAGGGCACACCTTGGATGCAGTAAATTGTCATCAGGATATCATTACGCAGCGAGGCTTTCTGCGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAAAATGTACCAGTAGTGCTAATGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTTCTTTGATGTAGTAATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAAAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTGCTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAACGGAAGTCAATTTTTTATTTGCACTGTACCGACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGACGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAATCATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA 756 0.4233 MASLFSTQLVQSQNLLSGFNAAQGKSHVVCSSTRAHLGCSKLSSGYHYAARLSASQQSKAKSITSRRIKCTSSANAADLQAKVTSKVFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFALKHVGPGVLSMANAGPNTNGSQFFICTVPTSWLDNRHVVFGHVIDGMDVVTTLESQETSSYNNGPLKSCKIVNSGELPLDG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3082 251 CDD cyclophilin_ABH_like 85 245 - -
Mtr1g3082 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 40 250 - -
Mtr1g3082 251 Gene3D - 71 250 IPR029000 -
Mtr1g3082 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 40 250 - -
Mtr1g3082 251 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 97 244 IPR002130 GO:0000413|GO:0003755
Mtr1g3082 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 120 IPR002130 GO:0000413|GO:0003755
Mtr1g3082 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Mtr1g3082 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 192 IPR002130 GO:0000413|GO:0003755
Mtr1g3082 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 204 IPR002130 GO:0000413|GO:0003755
Mtr1g3082 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 220 IPR002130 GO:0000413|GO:0003755
Mtr1g3082 251 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 246 IPR002130 GO:0000413|GO:0003755
Mtr1g3082 251 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 129 146 IPR020892 GO:0003755|GO:0006457
Mtr1g3082 251 SUPERFAMILY Cyclophilin-like 79 247 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3082 Mtr-Chr1 42094289 42097379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3082 99 244 U-box Gene Family AT5G67530 45.578 4.67e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3082 K03768 - gmx:100526955 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3082 1 42094289 42097379 Mtr1g3082 1 42094289 42097379 ECH