Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3075 ATGGAAAGGGCAAGTTTCATTGGTGCAGTAGTACTAGTAGTGCTTGTGGGGTTGTTCACCTCAGAAGTAAGAGTAGAATCAGCAGCTTGGCAGAAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACTATGGGGGGTGCATGTGGGTATGGAGACTTGTACAAAGATGGTTATGGAATAAAAACAGCTGCATTGAGTACTGCTTTGTTTAATGATGGAAAGTCATGTGGTGGTTGCTATCAGATTGTTTGTGATGCAAGTCAAGTTCCCCAATGGTGCCTCAGGGGAACTTCCATAACAATTACTGCCACTAATTTTTGTCCCCCAAACTTTGCTCTTCCTAGTGACAATGGTGGTTGGTGTAATCCTCCTAGACCACATTTTGACATGTCCCAACCTGCTTTTCAAATGATCGCCAAATATAAGGCTGGGATTGTTCCAATCCTTTACAGAAAAGTTGAGTGCAAAAAAAGTGGAGGCATAAGATTTAAAATCAATGGAAGAGACTATTTTGAACTAGTGCTTATAAGCAATGTAGGGGGAGCAGGTGATATCTCCAAAGTTTGGATCAAAGGGTCTAAAATGAGAAACTGGGAATCTATGTCAAGAAATTGGGGTGCTAACTGGCAAAGCTTAAGCTATCTAAATGGTCAGAGTCTGTCCTTCAGAGTCCAACTCAGTAATGGAAAGACTCTCACGGCTGTTAATGTGGTACCCTCTAGTTGGAGATTTGGTCAGTCTTTCATCAGCAAGGTTCAGTTCTGA 774 0.4225 MERASFIGAVVLVVLVGLFTSEVRVESAAWQKAHATFYGGSDASGTMGGACGYGDLYKDGYGIKTAALSTALFNDGKSCGGCYQIVCDASQVPQWCLRGTSITITATNFCPPNFALPSDNGGWCNPPRPHFDMSQPAFQMIAKYKAGIVPILYRKVECKKSGGIRFKINGRDYFELVLISNVGGAGDISKVWIKGSKMRNWESMSRNWGANWQSLSYLNGQSLSFRVQLSNGKTLTAVNVVPSSWRFGQSFISKVQF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3075 257 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Mtr1g3075 257 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Mtr1g3075 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Mtr1g3075 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Mtr1g3075 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Mtr1g3075 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Mtr1g3075 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Mtr1g3075 257 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Mtr1g3075 257 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Mtr1g3075 257 PANTHER EXPANSIN 9 257 - -
Mtr1g3075 257 Gene3D - 17 159 IPR036908 -
Mtr1g3075 257 SMART dpbb_1 65 153 IPR007112 -
Mtr1g3075 257 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Mtr1g3075 257 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Mtr1g3075 257 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Mtr1g3075 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Mtr1g3075 257 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Mtr1g3075 257 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Mtr1g3075 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Mtr1g3075 257 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Mtr1g3075 257 Pfam Lytic transglycolase 65 153 IPR009009 -
Mtr1g3075 257 Gene3D - 163 257 IPR036749 -
Mtr1g3075 257 PANTHER EXPANSIN-A15 9 257 IPR002963 GO:0009664
Mtr1g3075 257 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Mtr1g3075 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Mtr1g3075 257 SUPERFAMILY Barwin-like endoglucanases 29 181 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3075 Mtr-Chr1 42039446 42040921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3075 10 257 Expansin Gene Family AT4G01630 75.403 3.45e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3075 - - gmx:100783801 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3075 1 42039446 42040921 Mtr1g3075 1 42039446 42040921 ECH
Mtr7g3551 7 52521404 52522761 Mtr1g3075 1 42039446 42040921 PCT