Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3071 ATGGTTAAGGATAAAGTTCATATTAACGTTGTGGTTATTGGTCATGTTGACTCTGGGAAGTCAACTACTGCTGGTCATTTGATCTACAAACTTGGAGGTATTGAAAAGGATGTCATTGAGAGACTTGAGAAAGAAGCTACTGAGATAAACAAGCCATCGTTCAAGTATGCTTGGGTGCTCGACAAGCTCAAGGCCGAGCGTGAAAGAGGTATCACTATTGACATTTCTCTGTCAAAGTTTGAGACTACCAAGTACTACTGCACTCTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATTACCGGGACGTCCCAAGCTGACTGTGCTGTTCTCGTCATTGATTCCACAACTGGTAGTTTTGAAGCTGGTTATTCTCAGGAAGGTCAGACCTCTGAACATGCTCTTCTTGCATTCGTTCTTGGTGTGCGCCAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACACCCAAATACTCCAAGGATAGGTATGAAGAAATTGTGAAGGAATTTTCACCCTTTTTGATTGATGTTGGCTATAACCTAGATGAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATCATTGAACGCTCTACTAACCTTGACTGGTATAAGGGTCCCACCCTTCTTGAAGCTCTTGACCAAATCAAGGAGCCTAAGAGGCTATTAGACAAGCCTCTCCGATTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGACGGGTTGAGAGCGGTGTCTTGAAACCAGGAATGGCGGTGACTTTTGCCCCAACTGGGCTGAAAACTCTTGTGAATTCTATGGAGATGCACCATGAAAAGCTCAATGAGGCCCTTCCTGGTGACATTGTGGGATTTAATGTTCAGCATGGGTCTGTTAAGGATCTCCGGCGAGGCTATGTTGCCTCAGACTCCAAGCATGACCCAGCCACGGAGGCTGCTAAATTTACATCCCGTGTTATCATCACGAATCAAACTGGCCGGATTCAAAATGGCTATACACCTATTCTGGACTGCCACACCTCCCACGTTCCTGTCAAGTTTGCTAAGCTTGTTACCAAGTTTGACAGGTTTTCTGGTTTGGAAATCGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTGTTGTTAAGATGATTCCCACCAAGTCCATGGTGGTAGAGGATTTTTCTACTTATCCTCCACTTGGCCGTTTTGCTGTCAGAGACATGCGTCAAACTGTGGCTGTTGGAGTCATCATGGTTGTGAAGAAGAAGGATCCTCATGCAGAAGGTAAGATCGCTAAGTAG 1329 0.4515 MVKDKVHINVVVIGHVDSGKSTTAGHLIYKLGGIEKDVIERLEKEATEINKPSFKYAWVLDKLKAERERGITIDISLSKFETTKYYCTLIDAPGHRDFIKNMITGTSQADCAVLVIDSTTGSFEAGYSQEGQTSEHALLAFVLGVRQMICCCNKMDATTPKYSKDRYEEIVKEFSPFLIDVGYNLDEIPFVPISGFEGDNIIERSTNLDWYKGPTLLEALDQIKEPKRLLDKPLRLPLQDVYKIGGIGTVPVGRVESGVLKPGMAVTFAPTGLKTLVNSMEMHHEKLNEALPGDIVGFNVQHGSVKDLRRGYVASDSKHDPATEAAKFTSRVIITNQTGRIQNGYTPILDCHTSHVPVKFAKLVTKFDRFSGLEIEKEPKFLKNGDAGVVKMIPTKSMVVEDFSTYPPLGRFAVRDMRQTVAVGVIMVVKKKDPHAEGKIAK* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3071 442 Gene3D - 1 226 IPR027417 -
Mtr1g3071 442 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mtr1g3071 442 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mtr1g3071 442 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mtr1g3071 442 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mtr1g3071 442 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Mtr1g3071 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Mtr1g3071 442 CDD EF1_alpha_II 231 320 - -
Mtr1g3071 442 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Mtr1g3071 442 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Mtr1g3071 442 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Mtr1g3071 442 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mtr1g3071 442 Gene3D Translation factors 230 316 - -
Mtr1g3071 442 SUPERFAMILY Translation proteins 231 322 IPR009000 -
Mtr1g3071 442 Gene3D Translation factors 323 430 - -
Mtr1g3071 442 CDD EF1_alpha_III 323 426 - -
Mtr1g3071 442 CDD EF1_alpha 9 227 - -
Mtr1g3071 442 PANTHER ELONGATION FACTOR 1-ALPHA 1 439 - -
Mtr1g3071 442 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Mtr1g3071 442 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 427 IPR009001 -
Mtr1g3071 442 PANTHER TRANSLATION FACTOR 1 439 - -
Mtr1g3071 442 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3071 Mtr-Chr1 42012244 42013760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3071 1 434 Eukaryotic Initiation Factors Gene Family AT5G60390 81.106 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3071 K03231 - gmx:100801611 716.842