Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3065 ATGTTTAAAAGAACATCATTTGCTTCATTAGAGAGTGTGCGGCCTTATCCATCATTCTCCTCTCACAGCAAACCCAAAATGGCTTCTTCCATCGGAACTTCTTCCATAAACAAAACCCAACTTCTCAATACACCAACTTCATTTTCACTCTACAACACCACTTCTCGTCTAAACACCCTTCTCCGTCTCCGTCCTAACCACAAAACCCCAACTGTTTCCTTCGTTATTTCTGCTATTGCCACCCCCAACGCTCCTATCCTCACCCCTCAAGAATCCTTCAAGGGTTTTGCTTTCGATGACGCTAACGATGTTCCTGTTGCCGTCAGCAAAAACGAACTTGATATTTCCAAGCTTGGTTTTCCTTCTCAGCTTGTTGACTCGCTTCAGAGACGTGGAATTACTAGTCTTTTCCCCATTCAGAGAGCTGTGTTGCTGCCTGCATTAGAAGGCAGAGATATCATTGCCCGTGCAAAGACCGGGACTGGAAAGACATTAGCATTTGGAATTCCAATTATCAAGGGTCTCACTGAGAATGAACAAAGCAATATGATGAGGCGGTCTGGTCGGCTTCCTAAAGTACTGGTCCTTGCACCCACCAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATTTAAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAGAGGAATGCACTTTCACGCGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTAATTGACCTCATAAATGGGGGAACCCTTAAACTTGCTGAAATTCAGTATTTGGTACTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGAGCGTCGAAGAAATTTTGGAATCAATCCCATCTCAGCGCCAGATTATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCTTTGACTATTGATTTGGTCGGTGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTATCAGCCACTTCAACATCAAAGCGGAGAATTCTTTATGGTCTTATAAGTGCCTATGCAAATGGTGGGAAGACCATTGTTTTCACACGGACAAAAAGGGATGCGGATGAAATATCATTGTCACTAACAAATAGCATAGCTTCTAAACCACTACATGGTGATATCTCTCAGTATCAGAGAGAGAAAACATTGAATGGTTTTCGGCAAGGAAGATTCACAGTCCTTGTTGCTACCGACGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTACAGCTGTTGTAATGTACACCACTTCCCAGAAAAGAACTGTTATATCCTTTGAGCGCGAAGTAGGCTGCACGTTTGAATTTATTAGTCCACCACCTATGCAAGATTTACCCGAATCATCTACCAGGCAAGTTGTTCCTACGTTTGATAGAGATAGAAGTAATTATAGAGGATCTAGGGATCAAAGTGGTTTTAGAACCGGTGGGGATGACTGGCGAACCGGAGGTGGACGATCAAGTGGGTATTCATCATCAAACAGATCTTCGTCTTCAGGTTCTAGGGATCAGAGAGGTTTTAAAACCGGTGGGGATGACTGGCTAACTGGAGGTGGACGATCAAGTGGGTATTCATCATCAAACAGATCTTCGTCGTCGTCAGGTTCTAGGGAGAGAGGTTTTAAAACCGGTGATGATGACTGGTTAATTGGAGGTAGACGATCAAGCGGGTATTCATCATCAAACAGATCTTCATCACCAAACAGGAGAGGTAGTTATGGAGGGGCCTGTTTTAGTTGTGGACAACCTGGGCATCGGGCGTCAGATTGTCCCAATTAA 1926 0.4382 MFKRTSFASLESVRPYPSFSSHSKPKMASSIGTSSINKTQLLNTPTSFSLYNTTSRLNTLLRLRPNHKTPTVSFVISAIATPNAPILTPQESFKGFAFDDANDVPVAVSKNELDISKLGFPSQLVDSLQRRGITSLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPIIKGLTENEQSNMMRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGGTLKLAEIQYLVLDEADQMLAVGFEESVEEILESIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEGIKLYAVSATSTSKRRILYGLISAYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGDISQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAVVMYTTSQKRTVISFEREVGCTFEFISPPPMQDLPESSTRQVVPTFDRDRSNYRGSRDQSGFRTGGDDWRTGGGRSSGYSSSNRSSSSGSRDQRGFKTGGDDWLTGGGRSSGYSSSNRSSSSSGSRERGFKTGDDDWLIGGRRSSGYSSSNRSSSPNRRGSYGGACFSCGQPGHRASDCPN* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3065 641 MobiDBLite consensus disorder prediction 568 587 - -
Mtr1g3065 641 Pfam DEAD/DEAH box helicase 137 310 IPR011545 GO:0003676|GO:0005524
Mtr1g3065 641 CDD DEADc 124 322 - -
Mtr1g3065 641 Pfam Helicase conserved C-terminal domain 347 455 IPR001650 -
Mtr1g3065 641 Gene3D - 114 325 IPR027417 -
Mtr1g3065 641 MobiDBLite consensus disorder prediction 510 524 - -
Mtr1g3065 641 MobiDBLite consensus disorder prediction 603 621 - -
Mtr1g3065 641 SMART c2hcfinal6 625 641 IPR001878 GO:0003676|GO:0008270
Mtr1g3065 641 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 60 507 - -
Mtr1g3065 641 SMART ultradead3 132 338 IPR014001 -
Mtr1g3065 641 MobiDBLite consensus disorder prediction 486 641 - -
Mtr1g3065 641 Pfam Zinc knuckle 625 641 IPR001878 GO:0003676|GO:0008270
Mtr1g3065 641 Gene3D - 336 513 IPR027417 -
Mtr1g3065 641 SMART helicmild6 375 455 IPR001650 -
Mtr1g3065 641 MobiDBLite consensus disorder prediction 492 506 - -
Mtr1g3065 641 MobiDBLite consensus disorder prediction 534 554 - -
Mtr1g3065 641 CDD SF2_C_DEAD 335 464 - -
Mtr1g3065 641 Gene3D - 616 641 - -
Mtr1g3065 641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 502 IPR001650 -
Mtr1g3065 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 476 IPR027417 -
Mtr1g3065 641 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 321 IPR014001 -
Mtr1g3065 641 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 3, CHLOROPLASTIC ISOFORM X1 60 507 - -
Mtr1g3065 641 ProSiteProfiles Zinc finger CCHC-type profile. 626 641 IPR001878 GO:0003676|GO:0008270
Mtr1g3065 641 SUPERFAMILY Retrovirus zinc finger-like domains 610 641 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3065 Mtr-Chr1 41934537 41939570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3065 139 494 Eukaryotic Initiation Factors Gene Family AT1G72730 35.519 3.50e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3065 - K16911 vra:106757668 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3065 1 41934537 41939570 Mtr7g3560 7 52604674 52610380 ECH
Mtr1g3065 1 41934537 41939570 Mtr1g3065 1 41934537 41939570 ECH
Mtr7g3560 7 52604674 52610380 Mtr1g3065 1 41934537 41939570 PCT