Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3055 ATGCCTCTTTATGAGTTATACCGTTTGGCCAGAGAGAAGCTTGATAATGAGACTAACGGCACAAGTGTAGCAGATCAACCTTCGTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTGCCATCTCACTGTTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGATAAAGACGTAGGAGGAGGATTTAGTAACAACAATCCAAAGATAGGAAAGTTTGGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTGGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACACGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAATGACCTTCCTGCCTCGAATAGTTTTACTCTATTGGATAAAAGGAATAATGGGAATCAGATATTTAGGGACTCTCATAAAAATTCTGCAGAAGCGATGAATGTTTCCAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCAGTCAGTTATATCCCCCATCATCAAATCAATGTCAAACAACATCTGTAACTGTTAGATCTAGGGCATCAGATATAACCGAAAATAATAATGTTAGTAGTGGTAACCAGGACGTGCCTTATGGGGATATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAAGCGCAGAAGCAAGATCCTGTAATGCCTGGCAATGGTTCCAATGTAATGAATTTTTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATATTATGGGAGTTAAGAATAAAGGCGCTGCTTCGACTAGCAGCAATCCTCCTGATTCAGCTCTTGTTAATCCAAGCGGTGAGTGTTCAAAGGAACCGGAAATGCGTTGTCATAAGGTGGTAGAGCCATCCAAGGCTGATTTGAAACCTTTGCAGCCGAAATCGCTTGAACCGAATGCTGTAGCTACTAAACAATCGAAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACCTTCCATTCAAGTTCTTGGTGACAATGGCGCTAAAGGACACGCAGCTGCTGACAAAGGCATGGAGGTGGCAGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTAAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTGGGAGTTAAAAAGGGAGCGGCTGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTGCAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCCGCATTTTCACAGACGGGCATCGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGTGCCGTCTAGATTTCCAATGATTCAAGTACCTCAGATGCAAGGAAATCATGTGCCCGTTGCGCATATGCCTGGACCCTCTGCTATGCATGGAATGGCCAGATCGAATACTCAAGGGTTTGTACTTCCGGGACAGGGAACTTCCATGCCAATGCCGCATACTCCGGTATTCCCTTTTTCAGGAGGGCCTCTTATGAACTCATCCGCTCCGGGTCCGTCTGTGTATGGATCCACAGGACATGTTGAAGCTGTGAATCCGGCTTCAGCGTGTGGCTCAAAAGATCGAAGGCCAGATGTGGACTCAAAAATTAAGCAAAACACTGCTGGTCGTGACTCTACAAGCCAGATCCCTAACCAGTCAACTTTGGTACATAATGGTGGCCATACTTCAGTGGCTGATGACAGTGAAGCTGCTAATCCTGGCAATATCACTTTGTGA 2166 0.4451 MPLYELYRLAREKLDNETNGTSVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDKDVGGGFSNNNPKIGKFGDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNSFTLLDKRNNGNQIFRDSHKNSAEAMNVSKGSSAEQVVETARHKASASQLYPPSSNQCQTTSVTVRSRASDITENNNVSSGNQDVPYGDITRIPSSSSDFSSLKAQKQDPVMPGNGSNVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDIMGVKNKGAASTSSNPPDSALVNPSGECSKEPEMRCHKVVEPSKADLKPLQPKSLEPNAVATKQSKPACKENGIKNDQPSIQVLGDNGAKGHAAADKGMEVAVASSSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGMQHMHAPHMAAFSQTGIGMHMGLGMGYGMGMPDMNGVPSRFPMIQVPQMQGNHVPVAHMPGPSAMHGMARSNTQGFVLPGQGTSMPMPHTPVFPFSGGPLMNSSAPGPSVYGSTGHVEAVNPASACGSKDRRPDVDSKIKQNTAGRDSTSQIPNQSTLVHNGGHTSVADDSEAANPGNITL* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3055 721 SMART finulus 474 523 IPR011598 GO:0046983
Mtr1g3055 721 MobiDBLite consensus disorder prediction 309 325 - -
Mtr1g3055 721 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 530 IPR036638 GO:0046983
Mtr1g3055 721 MobiDBLite consensus disorder prediction 682 704 - -
Mtr1g3055 721 Pfam Helix-loop-helix DNA-binding domain 472 518 IPR011598 GO:0046983
Mtr1g3055 721 PANTHER TRANSCRIPTION FACTOR PIF3 1 692 IPR044273 GO:0003700|GO:0006355
Mtr1g3055 721 MobiDBLite consensus disorder prediction 309 395 - -
Mtr1g3055 721 MobiDBLite consensus disorder prediction 661 721 - -
Mtr1g3055 721 MobiDBLite consensus disorder prediction 420 453 - -
Mtr1g3055 721 MobiDBLite consensus disorder prediction 40 99 - -
Mtr1g3055 721 PANTHER TRANSCRIPTION FACTOR PIF3 1 692 - -
Mtr1g3055 721 MobiDBLite consensus disorder prediction 409 477 - -
Mtr1g3055 721 Gene3D - 463 526 IPR036638 GO:0046983
Mtr1g3055 721 MobiDBLite consensus disorder prediction 333 347 - -
Mtr1g3055 721 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Mtr1g3055 721 MobiDBLite consensus disorder prediction 372 386 - -
Mtr1g3055 721 CDD bHLH_AtPIF_like 468 530 - -
Mtr1g3055 721 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3055 Mtr-Chr1 41806331 41810797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3055 1 597 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.129 1.83e-70 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g3055 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3055 K12126 - gmx:100794974 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3055 1 41806331 41810797 Mtr1g3055 1 41806331 41810797 ECH