Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3051 ATGTCTAGCATATACACCCCACTATCAGCTGTTTCTGGAGGAAGGAAGAACCTGAAGATGTGTGTGCGTGTTGCTCACATTTGGTTAATTCCAGCTAAAAAAGATCCAACTAACATCGTATTCATGAACATGCTGCTGGTGGATGCAAAGGGTGGACGTATCCACGCCACAGTTAGAAAGGATTTGGTGGCAAGATTCAGGTCAATGGTTGAGGAAGGGGCTACATATGAGCTTCACAATGCAATCGTCGCTATTAATGAAGGTCCATATAAGATAACTTCCCACAAACACAAACTTGGTATGCTGCACAACTCAAGTTTTACGAAAAAAGACTTACCTACTATCCCTATCAATGTTTTTGATTTCATGTCATTCAATGAAATCCTCTCTTCAAATGTCGAGGAGACATCTGCTGATGTTATTGGTCATGTAATTGAAAGGGGTGATGTAAAGGAAACTGAAAATGAGGGCAGGAAGAGCAAAGTGATTGATTTGACTTTGCAAGATTTGGAGAACAACCGTTTGCATTGCTCTCTTTGGGGTGAACATGCTGACAAAATTGTGAGCTTTTTTGTTAACCACGACAACTCTTCTCCTGTTGTATTGATATTGCAGTTTTGCAAGACACGCAAATATTTAGGTGCAATGGGGATTGTTAATGCGTTTTATGGGACTAAATTGATACTTAACGGCGATTTACCTGAAGTTGCTACTTACATCGCACGTATGAAAAAAACATCGCTCCAGTTGACCCAAAGTGTTAGCCAGATTTCCATAAACAGCTCTGCATCTCTTTCGGATGACTTGCTCAACACCAAGAGAATGACAATCGAAAGTATGATTGAGTCAACTCAGGTGTGTCAAGGTTCGGTACTTGCCACTATATGTGAGATCGAAACTGAGGTTGATTGGTACTTTCGATCGTGTACCCAATGTGCTACATTGGTCACTGTTGACAATGGAATGCTCCGGTGTCGCAAGTGCAAAACTTGCAAAAGTGCTGTGCCTAGGTTCAAGCTGCATGTCATTGTGATGGACGATACAGGGTCAACTACTTTTGTTCTTTTTGATCGCCAAGTGACGCAATTTATTGGGCGTAATGTGCAGGACTTAATCAATGAACATGAGAAGGGAGAAGGCACCAATGATTATCCTCCTGATTTTAATGTGCTTATTGAAAAGCAAGTTCTTTTCAAGGTTGAGGTTGGTGAAGGAAATGTCGTGAAGAAGTATAGGAATTATGCCGTTAAGAAGGCATCTGACGATGTTGGTGTCATCGAACAGTTCATGTCTAAGTATAATTTGGAGAAACCCAACGATGGATCTGTTGAAGAGCTTAGTGTGAATGGTGTTGCAGCAAACAATTATAATGTTCAGGATGTACAAGAGGTTGAAGACTCATGCAGCAATACCTGTGTGATTGGCACACCAACCAGCAAGACAGGTCTTAAGCGGTCCTCTGATAGCATTGACTCTGTGGCTGTTGATCACGGTGAAGCTGGTCAGGCATCGGTTACAAAACCTAACAGGGCTGTTCGTGTCAAGATTGAGCCTAAAGACACTAGAGTTGTTTAA 1575 0.4171 MSSIYTPLSAVSGGRKNLKMCVRVAHIWLIPAKKDPTNIVFMNMLLVDAKGGRIHATVRKDLVARFRSMVEEGATYELHNAIVAINEGPYKITSHKHKLGMLHNSSFTKKDLPTIPINVFDFMSFNEILSSNVEETSADVIGHVIERGDVKETENEGRKSKVIDLTLQDLENNRLHCSLWGEHADKIVSFFVNHDNSSPVVLILQFCKTRKYLGAMGIVNAFYGTKLILNGDLPEVATYIARMKKTSLQLTQSVSQISINSSASLSDDLLNTKRMTIESMIESTQVCQGSVLATICEIETEVDWYFRSCTQCATLVTVDNGMLRCRKCKTCKSAVPRFKLHVIVMDDTGSTTFVLFDRQVTQFIGRNVQDLINEHEKGEGTNDYPPDFNVLIEKQVLFKVEVGEGNVVKKYRNYAVKKASDDVGVIEQFMSKYNLEKPNDGSVEELSVNGVAANNYNVQDVQEVEDSCSNTCVIGTPTSKTGLKRSSDSIDSVAVDHGEAGQASVTKPNRAVRVKIEPKDTRVV* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3051 524 SUPERFAMILY Nucleic acid-binding proteins 5 108 IPR012340 -
Mtr1g3051 524 CDD RPA1_DBD_A_like 19 107 - -
Mtr1g3051 524 Gene3D - 256 428 IPR012340 -
Mtr1g3051 524 Gene3D - 4 109 IPR012340 -
Mtr1g3051 524 CDD RPA1_DBD_B_like 139 244 - -
Mtr1g3051 524 Pfam Replication factor-A C terminal domain 291 409 IPR013955 -
Mtr1g3051 524 CDD RPA1_DBD_C 290 424 IPR013955 -
Mtr1g3051 524 Gene3D - 114 253 IPR012340 -
Mtr1g3051 524 PANTHER BNAC07G49340D PROTEIN 31 467 - -
Mtr1g3051 524 SUPERFAMILY Nucleic acid-binding proteins 120 244 IPR012340 -
Mtr1g3051 524 Pfam Domain of unknown function DUF223 44 135 IPR003871 -
Mtr1g3051 524 PANTHER REPLICATION FACTOR A 1, RFA1 31 467 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr1g3051 524 SUPERFAMILY Nucleic acid-binding proteins 273 418 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3051 Mtr-Chr1 41755430 41759983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3051 42 412 Core DNA Replication Machinery Family AT5G08020 23.650 5.96e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3051 - - mtr:MTR_1g105785 443.736