Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3045 ATGGATGCTACAAAGACAATTGCAATTTGTCAATCAGGAGGAAAATTTGAAACTGCAAAAGATGGTACTTTGTCATACAAAGGTGGTGATGCTCATGCTATGGATATTGACGATCAAATGAAATTTATCGACTTTAAGGTGGAAATAGCTGAGATGTTTAGTTTTAGTCATGTTAGTAGCATGTCTATTAAGTATTTTCTTCCGGGGAATAAGACCACTCTCATTTCAATTTCGAACGATAAGGATTTACAACGAATGGTTAAGTTTCATCATGGTTCGAGTACGGTTGAAATTTATATCTTTGTTGAAGATCCACTTGTCCTTGAAGCGTTGTCAACCATGCCTGCCAGTAGGTCAAGCAGAACAACTTTGTCTGAAACAGCGTTGCCTATCAATACCATACTGAATCCTGAAGGCGATTATGCTCCACCTGATGCTTCTCATGATACTATTCCGATGGATACAGATATGGACATACCTCTTTTGAGTCTTTCGTCAAACGAGGAGAAGCTTGCTAAAGGGGCACAGCAATGGCAGAATACTATCACTGGCGTGGGTCAAAGGTTCAACAGCGTACATGAATTTCGAGAGTTGTTGCGTAAATATGCTATTGCTCATCAGTTTGCTTTTAAATATAAAAAGAATGATAGTCATCGTGTGACTGTTAAATGCAAAGCTGAAGGTTGCCCTTGGAGAATTCATGCGTCGAGGCTGTCAAGCACTCAGTTGATATGCATAAAAAAGATGAATCCGGAACATACTTGTGAAGGGGCTGCTGGAACGACAGGGCATCAAGCAACTAGAGGTTGGGTGGCTGGTATTATCAAGGAAAAGTTGAAAGCTTGTCCTGACTACAAGCCCAAGGACATTGTCAATGACATCAAGCAGGAATATGGAATTCAACTTAACTACTTTCAAGCATGGCGTGGGAAAGAGATTGCAAAGGAGCAGCTTCAGGGTTCCTATAAAGAGGCGTATAGTCAGTTACCTTTTTTCTGTGAAAAATTAATGGAGGCTAATCCTGGAAGTCTAGCTATGTATACTACTAAGGAAGACTCAAGCTTCGATCGTCTCTTTGTATCATTTCGTGCTTCGTTGTATGGCTTTCAACAAGGTTGCCGACCACTGATTTTCCTTGATAGCATTCCACTGAAGTCAAAATACCAGGGGGCATTGTTAGCAGCAACAGCTGCTGATGCAGATGATGGTGTATTCCCTGTTGCCTTTGCCATTGTTGACGCTGAATCTGATGATAGTTGGCATTGGTTCTTGCTTCAACTCAAATCAGAGCTGTCAACATCTGTTCCCATAACATTTGTAGCAGACAGAGAGAATGGACTGAAAAACTCAATTGCTGAGATATTTGAAGGTTCATTTCATGCGTATTGCCTGCGATACTTAACGGAGCAACTTTTTAGAGACTTGAAAGAGCAGTATTCGCACGAGGTAAAGCGACTCATGATTGAGGATTTATATGCTGCTGCTTATGCACCCAAACCAGAAGGTTTTCAGAACTGCATGGAGAACATCAAACGGATTTCCGTAGAAGCTCACAATTGGGTTATGCAAAGTGATCCCCAGAATTGGGCGAATTCATTTTTTCAGGGTACTAGGTATAATCACATGACTTCAAACTTTGGGGAGCTGTTCTACTCTTGGGCATCAGATGCAGATGATTTACCGATAACACAGATGGTTGATGTTATTCGGGGCAAGATTACAGAGTTGATTATTACCAGAAAGGCAGAATCTGATCAGTGGTCGACTAGACTAAGTCCATCCATGGAGGAGAAGCTTAAACTGGAAATTCAAAAAAGCCCTTCACTTCAAGTTATATTATCGGCTGATAGTACATACGAAGTTTGTGGTGACTCATCTGAGTTAGTTGATATTGACAGGTGGGAATGTAGTTGTAAAACCTGGCAGCTAAGTGGGCTGCCATGCTGCCATGCCATTGCTGTCATTGTTGCGATAGGCCGGTCTGTTTATGATTTTTGCTCTAGATACTGTACATCTGAAAGCTACAGATTGACTTACTCAGAGTGTATAAATCCGATAATAAACATGGATGTGCCGGCTGCAATTGAGCCCTTGGTAACAGTAACACCTCCTCCCACCCGACGACCACCAGGCCGACCAGCTGCAAAGCGATACGGCTCTCAAGACCTAGTCAAGCGGGATCTACATTGCAGCCGATGCAAGGGACTAGGGCACAACAAGTCTACTTGCAAGGATGAGTTGTATCTCAGCAATACTTGA 2259 0.4219 MDATKTIAICQSGGKFETAKDGTLSYKGGDAHAMDIDDQMKFIDFKVEIAEMFSFSHVSSMSIKYFLPGNKTTLISISNDKDLQRMVKFHHGSSTVEIYIFVEDPLVLEALSTMPASRSSRTTLSETALPINTILNPEGDYAPPDASHDTIPMDTDMDIPLLSLSSNEEKLAKGAQQWQNTITGVGQRFNSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSSTQLICIKKMNPEHTCEGAAGTTGHQATRGWVAGIIKEKLKACPDYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQLPFFCEKLMEANPGSLAMYTTKEDSSFDRLFVSFRASLYGFQQGCRPLIFLDSIPLKSKYQGALLAATAADADDGVFPVAFAIVDAESDDSWHWFLLQLKSELSTSVPITFVADRENGLKNSIAEIFEGSFHAYCLRYLTEQLFRDLKEQYSHEVKRLMIEDLYAAAYAPKPEGFQNCMENIKRISVEAHNWVMQSDPQNWANSFFQGTRYNHMTSNFGELFYSWASDADDLPITQMVDVIRGKITELIITRKAESDQWSTRLSPSMEEKLKLEIQKSPSLQVILSADSTYEVCGDSSELVDIDRWECSCKTWQLSGLPCCHAIAVIVAIGRSVYDFCSRYCTSESYRLTYSECINPIINMDVPAAIEPLVTVTPPPTRRPPGRPAAKRYGSQDLVKRDLHCSRCKGLGHNKSTCKDELYLSNT* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3045 752 SMART PB1_new 19 105 IPR000270 GO:0005515
Mtr1g3045 752 SMART 26again6 634 661 IPR006564 GO:0008270
Mtr1g3045 752 Pfam MULE transposase domain 377 467 IPR018289 -
Mtr1g3045 752 Pfam MuDR family transposase 181 246 IPR004332 -
Mtr1g3045 752 Pfam PB1 domain 24 102 IPR000270 GO:0005515
Mtr1g3045 752 SUPERFAMILY CAD & PB1 domains 21 102 - -
Mtr1g3045 752 Pfam SWIM zinc finger 626 658 IPR007527 GO:0008270
Mtr1g3045 752 PANTHER POLYPROTEIN, PUTATIVE-RELATED 69 745 - -
Mtr1g3045 752 PANTHER - 69 745 - -
Mtr1g3045 752 ProSiteProfiles Zinc finger SWIM-type profile. 619 659 IPR007527 GO:0008270
Mtr1g3045 752 CDD PB1_UP2 9 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3045 Mtr-Chr1 41655399 41658771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3045 5 101 MAP Kinase Kinase Kinase AT1G16270 28.571 8.97e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3045 K17604 - gmx:100797259 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3045 1 41655399 41658771 Mtr1g3045 1 41655399 41658771 ECH