Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3040 ATGACCAAGAGCATGAATCTTTCTAGAGCTTTGTGCTTTCTTATTGTGTGCTTCTTGTTTCTTAACTTGAATTTGTGTTGCTATTCTTTGAATGAAGAAGGTAATAGTCTTTTGAAGTTGAAGAAGAGAATAATTAGTGACCCTTTTGGTGCTTTATCAAATTGGATTGATGATGAAGTTTCTGTTGACCCTTGTGATTGGTTTGGAGTTGAATGTTCAGATAGAAATGTTGTAGTCTTGAATTTGAAAGATCTTTGCCTTGAAGGAACTCTAGCACCAGAGCTTGTGAACCTTGTTCACATAAAATCTATTATTTTAAGGAACAACTCTTTCTATGGAACCATACCTGAAGAAATTGTAGACTTGAAACAATTGGAGATTTTGGATTTGGGATATAACAACTTCAGTGGACATCTAGATGCTAATTTTGGTCATAATATCACATCACTAGCAATTCTTTTGCTTGACAACAATGAACTCCTTATTGGTTTCTCCCCCAAAATCAATGAACTGAAGATGCTTTCGGAGTATCAAGTAGATAAAAATCAGTTAATCAATGCAGATAAGATGTCATCTTGTTCTGAAAGATCCATCACATGGCATGTTCATGAAAATGAAGGTCCTAGGAGCCTGCAGGAATATCACCAACATCATCGTCGTCCTTATCAATACCGTCATAACCGTACTTCACCGCTCTATAGATCTTTTCCTTCACATTCTTCAAGTCCATCTTCGGATTCTCCTATTCAAAATGCTTCAGAATCTCCAAATAAAAATGCTTCTGATTCTCTTCCTCCACTGTCAAAGAAGAATCAAGTTCCTATTTTTGCTGGAGTAATTATTGGTGGTGCTGTTTTTCTTGTTATTTCAAGCATTGGTATATATCTTTGTAAAACCAATAAGTTAGCTATTGTTAGACCTTGGAGTACTGGAATAAGTGGACAGCTTCAGAAAGCACTTGTCACCGGTGTGCCAAAGCTAAATAGATCAGATCTTGAAGCAGCATGCGAAGATTTTAGCAATGTAATTGGTAATTCACCAATTGGTACATTGTACAAAGGAACTTTGTCTAGTGGAGTTGAAATTGCGGTAGCTTCTGTTTCTGTGACATTATCCAAGAGTTGGACAAGGACTTTAGAAACTCAATTTAGGAAGAAGATAGACACATTATCAAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATATTGTGAAGAAGAAGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAATGGAACACTATTTGAGCATTTACATATAAAAGAAGGTGAGCACTTGAACTGGGGACCAAGACTTAGAATTGCAATGGGAATGGCTTACTGCCTACAACATATGCATGGATTGGACCCTCCTGTAGTCCTTATTAACCTGAATTCTTCATCCGTCCACCTAACCGATGACCACGCCGCGAAAACCTCAGATTTGAGTTTCTCCAACGAAATAGATTCATCTGAAAAGAAATCTGATGGTAGAAAACACATTGACATGATGCAATCAGCAAGTCCATCAAGTAATGTTTATAGCTTTGGTGTTTTATTATTCGAAATAGTTACCGGTCGAATTCCTTATTCGGTTGATAATAGCTCACATGAAAACTGGGCATCACATTATCTAAAATGGGACAAACCTCTTAAGGAAATGGTGGATCCAACTCTAGCATCTTACCAAGAAGATCAGGTGGAACAAGTTGCTGAATTGATAAGAGTTTGTGTTGATCCGGATTCGGACAAGAGACCGACGATGAAGGAAGTCAGTGAAAAATTGAGAGAGATAACAAAAATGTCACCTGAAATTGTAGTTCCAAAACTTTCTCCGCTCTGGTGGGCTGAGATTGAGATTTCTTCTGCATAA 1884 0.3731 MTKSMNLSRALCFLIVCFLFLNLNLCCYSLNEEGNSLLKLKKRIISDPFGALSNWIDDEVSVDPCDWFGVECSDRNVVVLNLKDLCLEGTLAPELVNLVHIKSIILRNNSFYGTIPEEIVDLKQLEILDLGYNNFSGHLDANFGHNITSLAILLLDNNELLIGFSPKINELKMLSEYQVDKNQLINADKMSSCSERSITWHVHENEGPRSLQEYHQHHRRPYQYRHNRTSPLYRSFPSHSSSPSSDSPIQNASESPNKNASDSLPPLSKKNQVPIFAGVIIGGAVFLVISSIGIYLCKTNKLAIVRPWSTGISGQLQKALVTGVPKLNRSDLEAACEDFSNVIGNSPIGTLYKGTLSSGVEIAVASVSVTLSKSWTRTLETQFRKKIDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEGEHLNWGPRLRIAMGMAYCLQHMHGLDPPVVLINLNSSSVHLTDDHAAKTSDLSFSNEIDSSEKKSDGRKHIDMMQSASPSSNVYSFGVLLFEIVTGRIPYSVDNSSHENWASHYLKWDKPLKEMVDPTLASYQEDQVEQVAELIRVCVDPDSDKRPTMKEVSEKLREITKMSPEIVVPKLSPLWWAEIEISSA* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3040 627 MobiDBLite consensus disorder prediction 233 266 - -
Mtr1g3040 627 PANTHER LRR RECEPTOR-LIKE KINASE 1 627 - -
Mtr1g3040 627 SUPERFAMILY L domain-like 36 188 - -
Mtr1g3040 627 Pfam Protein tyrosine and serine/threonine kinase 340 599 IPR001245 GO:0004672|GO:0006468
Mtr1g3040 627 Pfam Leucine rich repeat N-terminal domain 31 73 IPR013210 -
Mtr1g3040 627 SUPERFAMILY Protein kinase-like (PK-like) 330 619 IPR011009 -
Mtr1g3040 627 PANTHER PROTEIN MALE DISCOVERER 2 1 627 - -
Mtr1g3040 627 Gene3D Phosphorylase Kinase; domain 1 312 419 - -
Mtr1g3040 627 ProSiteProfiles Protein kinase domain profile. 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3040 627 Gene3D Transferase(Phosphotransferase) domain 1 420 610 - -
Mtr1g3040 627 Gene3D Ribonuclease Inhibitor 29 225 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3040 Mtr-Chr1 41603001 41606992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3040 5 599 Receptor kinase-like Gene Family AT5G16000 25.118 3.32e-45 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Mtr1g3040 PK_Tyr_Ser-Thr 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3040 - - lja:Lj2g3v2794510.1 828.55