Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3038 ATGGCAATGAAAAAGTACTACTGTGAGTATTGCGATAAGCAATTTCAAGATACACACTTAGACCGGAAACGCCACTCTGCCGGTATTCAACACAAACAAGCCAAATCTCGTTGGTACGATTCCTTCAAACCCGAACACCATAACCCTATTCCACCCTTCTGCTTCCACTTCGTCAACACGGGATTTTGTCGTTACGGCGATTCTTGCAAATATTTTCATCCCAATACACAACAACAACAACCAATAACAACAACACCAGGGAATATAGTAGGAGATACCATGGGTGTCTCATTCGGCAATTTACCTCCGTCACTGCAGCCTCCTCCTGAAGTTGGATACTCCAACCTCCCCTTTCTCGACTGGGGATAG 369 0.4499 MAMKKYYCEYCDKQFQDTHLDRKRHSAGIQHKQAKSRWYDSFKPEHHNPIPPFCFHFVNTGFCRYGDSCKYFHPNTQQQQPITTTPGNIVGDTMGVSFGNLPPSLQPPPEVGYSNLPFLDWG* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3038 122 Gene3D Classic Zinc Finger 3 50 - -
Mtr1g3038 122 PANTHER NUCLEASE-RELATED 1 122 - -
Mtr1g3038 122 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Mtr1g3038 122 SUPERFAMILY beta-beta-alpha zinc fingers 3 47 IPR036236 -
Mtr1g3038 122 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Mtr1g3038 122 Pfam U1 zinc finger 3 39 IPR013085 GO:0008270
Mtr1g3038 122 SMART c3hfinal6 48 75 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3038 52 81 C3H Transcription Factor Family AT1G04990 56.667 7.97e-06 41.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr1g3038 zf-U1 4.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3038 K13152 - gmx:100527203 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3038 1 41583690 41584573 Mtr1g3038 1 41583690 41584573 ECH