Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3030 ATGAAGCAGGTACAAAGCATCTCAAAGAATCACTCAAGCTTCACCAGCTCCGACCAGTTCTTCCGACGGAGGCTAACCGGGTGTTCAAATTCGGCGATGAAGTTGATGCCTATCACAAATGGATGGTGGGAGGGTCACATTACTGAGGAATTGGAGGATGGAAGGTTCGCGGTGTATTTCAGAGTTTCGAAGGAGCAGATCGTGTTCAACAAGGAGGAGCTCAGACTTCACCGTGAATGGATGCATGAAAAATGGGTCCCACCTTTTCAACAACAGGATGATAGTGACATCAAGAAAAAGGTGACGGTGAAGGTTGATGAAACTGTGACGGAAGAGAATGTGGATTTTGAGGTTAAGCCAGGGACATTGGTTGAGGTTTGCAGTGATGAAGAGGGTTTTAAAGGAGCTTGGTTTTCTGCCACACTTGTTGAGGTGAAGGGAGAAGGTAAGTTAGTTGTCGAGTACGATAGCCTGCTGGATGAGGATTCAAGTCTCCTGAGAGAGGATGTTGATATCCTGCAAATGAGGCCTCGTCCACCAAAAACTGCTGAAGTTGCTCAGTTTGAAGTTCTTGATGAAGTTGATGCTTATTATAACGATGGGTGGTGGGTTGGTGTTGTTTCGAAAGTTCTTGGGGACTCCAAGTATATTGTTTTTTTCAGGAACTCCAATGAGGAAATTGAGTTTCAAGATTCCCAGTTGAGGCTGCATCAGGACTGGATGAATGGCAAATGGGTCATGGTTTCGAAGGCGTTGGTGTTGAGGTTTTGA 771 0.4553 MKQVQSISKNHSSFTSSDQFFRRRLTGCSNSAMKLMPITNGWWEGHITEELEDGRFAVYFRVSKEQIVFNKEELRLHREWMHEKWVPPFQQQDDSDIKKKVTVKVDETVTEENVDFEVKPGTLVEVCSDEEGFKGAWFSATLVEVKGEGKLVVEYDSLLDEDSSLLREDVDILQMRPRPPKTAEVAQFEVLDEVDAYYNDGWWVGVVSKVLGDSKYIVFFRNSNEEIEFQDSQLRLHQDWMNGKWVMVSKALVLRF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3030 256 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 40 163 - -
Mtr1g3030 256 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 73 250 - -
Mtr1g3030 256 Pfam Agenet domain 121 180 IPR008395 -
Mtr1g3030 256 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 73 250 - -
Mtr1g3030 256 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 40 163 - -
Mtr1g3030 256 SMART agenet_At_2 186 242 IPR014002 -
Mtr1g3030 256 SMART agenet_At_2 31 82 IPR014002 -
Mtr1g3030 256 SMART agenet_At_2 116 183 IPR014002 -
Mtr1g3030 256 Gene3D - 105 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3030 Mtr-Chr1 41485454 41488878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3030 128 240 PHD Transcription Factor Family AT5G58610 31.111 3.88e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3030 - - cam:101504150 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3030 1 41485454 41488878 Mtr1g3030 1 41485454 41488878 ECH