Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3024 ATGGAAGGCAACAAGACTATGGTTCCATCATCATCACCATCAGATACCAAACTCACCAATGGTACTGTTGTGTCCAATGATGACTTAGAGATAGAGACCTTCTATGTCAAACTAACTGAAGTTTTGGACTCCTCTGGGTTCAATCTCATTTTCAATGTCCGAGAGACAATCTTAGACTTGTACCTCTTTTACTTGGAAGTCACCAGAAGAGGAGGTTTTCACCAGGTTGGTCTTCAAAACAAATGGACTGAAGTTGTCTCTGCACTGAAATTGGAAGGCAACAATGCAATGTTATCTGCTCAAGTCGAAAAGATCTATGCAACACTTCTATACAAATTTGAGAAATTGTACTTCTACAGGTTTCCTCCAACCGGCAGCTCCCAAGGTACGCTTAAAAGGAAGCAGAACTTGCAGAACTCGACTACTGGTTTATCTCAATTGATGGCTGATGAAGATACTCTGAAGGTGGCAAAACTGTCCAAGGACTACTCTAGCCAAATGACAGCAGGAGCCGGCTGTCAAGAACCTCGGGTGCTTCTACAAGCACCCTCAAATGACAAAGAAAAAAAGAAACAAGACAAAGAAAAGAAGAAACGACGAGGTCCTCCTACCGGACAAAGTGGATATCAAATATTCCTCAAGCATGAGTGTGCTCGATTAAAAGCTCATGATCCTGACATTGATGGCAAAAAAGTCCTACGCATGGCTGTTGATGCTTGGCAGAAGATGTCTGCCACCGATAAAGAGCCATATGTGGAGGAAAGCAGGAAGATAAAGGAAAAACAGAAGGAAGCAATGATCACTGACAATAAACAGAAGAGCACTGAAGATCTTAAGAAGGATGAACAGAAGAGCACTGAAGTTCTTAAGAAGGATGAAAAGAAGAGCACTCAAGGTCTTAATCTAAAGAAGGATGACAAGATGCCTGGTGTGGATGGTGACGACTATGGTGTAACTTCGCAACCTCTACCAAATTATTCTTTTGTCAACAATGCAGCTGTGGAGTTGGCTTTCAAAATGACTGAAAAATCACTCAAGGATCCCTTCTTCCCAGTTGATTTGGATACTTATTGTTCGTTAAATATGCTAAATGGGAAATCCAAATGA 1107 0.4146 MEGNKTMVPSSSPSDTKLTNGTVVSNDDLEIETFYVKLTEVLDSSGFNLIFNVRETILDLYLFYLEVTRRGGFHQVGLQNKWTEVVSALKLEGNNAMLSAQVEKIYATLLYKFEKLYFYRFPPTGSSQGTLKRKQNLQNSTTGLSQLMADEDTLKVAKLSKDYSSQMTAGAGCQEPRVLLQAPSNDKEKKKQDKEKKKRRGPPTGQSGYQIFLKHECARLKAHDPDIDGKKVLRMAVDAWQKMSATDKEPYVEESRKIKEKQKEAMITDNKQKSTEDLKKDEQKSTEVLKKDEKKSTQGLNLKKDDKMPGVDGDDYGVTSQPLPNYSFVNNAAVELAFKMTEKSLKDPFFPVDLDTYCSLNMLNGKSK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3024 368 Gene3D High mobility group box domain 183 271 IPR036910 -
Mtr1g3024 368 MobiDBLite consensus disorder prediction 262 313 - -
Mtr1g3024 368 SUPERFAMILY ARID-like 28 118 IPR036431 GO:0003677
Mtr1g3024 368 SMART hmgende2 201 271 IPR009071 -
Mtr1g3024 368 SUPERFAMILY HMG-box 189 266 IPR036910 -
Mtr1g3024 368 CDD HMGB-UBF_HMG-box 207 266 - -
Mtr1g3024 368 Pfam HMG (high mobility group) box 203 266 IPR009071 -
Mtr1g3024 368 Pfam ARID/BRIGHT DNA binding domain 32 114 IPR001606 GO:0003677
Mtr1g3024 368 Gene3D - 17 136 IPR036431 GO:0003677
Mtr1g3024 368 ProSiteProfiles ARID domain profile. 28 118 IPR001606 GO:0003677
Mtr1g3024 368 MobiDBLite consensus disorder prediction 262 312 - -
Mtr1g3024 368 SMART ARID_2 25 114 - -
Mtr1g3024 368 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 202 270 IPR009071 -
Mtr1g3024 368 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 355 - -
Mtr1g3024 368 MobiDBLite consensus disorder prediction 168 210 - -
Mtr1g3024 368 MobiDBLite consensus disorder prediction 182 202 - -
Mtr1g3024 368 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g3024 368 SMART bright_3 29 119 IPR001606 GO:0003677
Mtr1g3024 368 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 4 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3024 Mtr-Chr1 41411649 41415556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3024 13 267 ARID Transcription Factor Family AT3G13350 24.825 2.34e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr1g3024 ARID 4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3024 - - mtr:MTR_1g084150 426.402