Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3020 ATGGATTTTCAGGGTTTCTTAAACGACTTGCAGGATTGGGAACTTTCTACAAAGGATAAAGCGTCCAAAACGAAGTCACATAAGGAAAATAAATTCATAAAGGGTTCATCTTCTCGGAGTGATCGATCAATGGGTGTGGAGAATAGATCAAAAGGAGATACTATTGCTGTTGATCATGTGAGAAGTTCTTCAGCTCAGTATGATTTCTCAAGAAATAATGACGTGTTGAGTCGTGTGAGTAGCAGTTTGGCTTCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGACCTGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGATTGCTATTCAAGGAGCATTGCCTTCTCACCCACTGCTGTAGCCTATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTTGATGATCGGTACATAAAAGCATACTCTCGGCGAGCAACGGCTAGAAAAGAACTTGGCAAAAATAAAGAATCCATGGAGGATGCCGAGTTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCCGATGCTAAGTCACTGTATGAGAAGGAAATTCTACATAAAGCATCCAAAGCACTAAGAAACACTGTAGAAAAAGTGGCAAAGTCCGAGACAAAAGTTAATGGAAGCAGCAGCATCCACTCTGTTTCACATGGTACTAAAAAGTCAGGGCCAACTGAAGCTCATTGTCAAATAAAGGGTAATGAGCGGCAAATTCCTGCTAAAGAACCACTCTTGATGGAGGAGATCACTAGTAAGGATACAAAATCTGCAAGCAGGACTCAAGGACTAGTAGGAAATGGTTCTAAGGAAGGTTATAATGCAAGCCACAGCTTGGAACAGAGAAATCATAAAACTAAGCCGGAAATGAAAGCATCTGTTGAACAGCTTGCTTCTCAAGCTGCTTGTCGAGCCATGGCTGAAGCTGCAAAGAACATAACGCCACCAACTACAGCTTATCAGTTTGAGGTCTCTTGGAGAGGGTTTTCTGGTGATCTTGCTTTGCAGGCTTGTCTATTAAAGGCAATGTCTCCCCATGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTAGTTGAGATCATCAAGTGTGTACCATCCTTTTTTGCCGAAGACATGGATCTAGTTGTTAGTTATATGGATAATTTAACCAAGGTGCCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCTGCTAAGGATGATTTGCGCAAGATCTGGAATGAAGTGTTCTGCGCTGAGGCAACCCCGATAGAGTATGCTGAGATTCTGGACAACCTCCGATCAAAGTTCTACCTTGGATAG 1389 0.4183 MDFQGFLNDLQDWELSTKDKASKTKSHKENKFIKGSSSRSDRSMGVENRSKGDTIAVDHVRSSSAQYDFSRNNDVLSRVSSSLASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAYANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEILHKASKALRNTVEKVAKSETKVNGSSSIHSVSHGTKKSGPTEAHCQIKGNERQIPAKEPLLMEEITSKDTKSASRTQGLVGNGSKEGYNASHSLEQRNHKTKPEMKASVEQLASQAACRAMAEAAKNITPPTTAYQFEVSWRGFSGDLALQACLLKAMSPHELPKIFKNALSSTLLVEIIKCVPSFFAEDMDLVVSYMDNLTKVPRFDVIVMCLPSAAKDDLRKIWNEVFCAEATPIEYAEILDNLRSKFYLG* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3020 462 Gene3D Tetratricopeptide repeat domain 79 189 IPR011990 GO:0005515
Mtr1g3020 462 SMART tpr_5 158 191 IPR019734 GO:0005515
Mtr1g3020 462 SMART tpr_5 91 124 IPR019734 GO:0005515
Mtr1g3020 462 SMART tpr_5 125 157 IPR019734 GO:0005515
Mtr1g3020 462 MobiDBLite consensus disorder prediction 17 36 - -
Mtr1g3020 462 MobiDBLite consensus disorder prediction 17 54 - -
Mtr1g3020 462 SUPERFAMILY TPR-like 90 207 IPR011990 GO:0005515
Mtr1g3020 462 PANTHER OS05G0129900 PROTEIN 1 461 - -
Mtr1g3020 462 MobiDBLite consensus disorder prediction 227 248 - -
Mtr1g3020 462 MobiDBLite consensus disorder prediction 280 299 - -
Mtr1g3020 462 Pfam Potential Monad-binding region of RPAP3 339 428 IPR025986 -
Mtr1g3020 462 MobiDBLite consensus disorder prediction 277 299 - -
Mtr1g3020 462 MobiDBLite consensus disorder prediction 227 253 - -
Mtr1g3020 462 ProSiteProfiles TPR repeat profile. 91 124 IPR019734 GO:0005515
Mtr1g3020 462 Pfam Tetratricopeptide repeat 126 154 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3020 Mtr-Chr1 41374078 41380024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3020 95 161 U-box Gene Family AT3G07370 41.176 5.94e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3020 K23002 - gmx:100784528 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3020 1 41374078 41380024 Mtr1g3020 1 41374078 41380024 ECH