Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3018 ATGGAAGATAATTACCACAAGTTGAATGTCCCTTTTGTATGTTTTACAGTGGGTCATATTGATGGCAACATTAACGTTTATTCTTACACTGCTGCTGGATTGCATCTAGGAGGACTCGTGTGTGCTGCTGCTGCTAATAATAATAATAACTACCTTCACATGGAACACAACCGATCAGATCTAATAAGGTTGGATATGACGACGGATCGAATTATCAAGAACCAGATCGCAACTCACCCTCTTTATCCAAATCTACTATCTGCTTTTTTAGAATGCCAAAAGGTTGGGGCACCAACAGAACTTGCGTCTCTTCTTGAAGAAATAGGGCGTGAAAGCCACCCAAATAATGCTTTCCGTGAGATAGGAGATGATCCTGACCTTGACCACTTCATGGAATCATACTGTGAAGTTCTTCATAGATACAAAGAGGAGTTATCCAAGCCCCTCAATGAAGCAACATTATTTCTGTGTAATATTGAATCACAACTAAACGAACTTTGCAAGGGGACACAGACAATGTCATCCGATTACAACCGTTCAGATCATGAGGCAGCAGGGACATCAGAGGATGAAATGAGTTGTGGAAAGGTTGAAGCAGTAGAAGGTGGTCATGATGAACTTTGTGGCACATCATGTCCAGGTGATAAAGAGCTTAAAGAAATGCTTCTTCGTAAGTATGGGGGTTACCTTAGCAACTTAAGACAGGAATTTCTCAAGAAAAGGAAAAAGGGTAAACTACCAAAGGATGCAAGAAAAGCATTGATGGATTGGTGGAACGTCCACTATAGGTGGCCTTATCCCACGGAGGAGGAGAAACTGCAGCTATCAGATATGACTGGACTTGATATAAAGCAGATAAATAATTGGTTCATCAATCAGAGGAAAAGACACTGGAAACCATCTGAAGATATGAGATTTTCCATTATGGAGGGTGTAAGTAGCACCGGCATAGCAGGACCTCTGTAA 966 0.412 MEDNYHKLNVPFVCFTVGHIDGNINVYSYTAAGLHLGGLVCAAAANNNNNYLHMEHNRSDLIRLDMTTDRIIKNQIATHPLYPNLLSAFLECQKVGAPTELASLLEEIGRESHPNNAFREIGDDPDLDHFMESYCEVLHRYKEELSKPLNEATLFLCNIESQLNELCKGTQTMSSDYNRSDHEAAGTSEDEMSCGKVEAVEGGHDELCGTSCPGDKELKEMLLRKYGGYLSNLRQEFLKKRKKGKLPKDARKALMDWWNVHYRWPYPTEEEKLQLSDMTGLDIKQINNWFINQRKRHWKPSEDMRFSIMEGVSSTGIAGPL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3018 321 Pfam ELK domain 217 238 IPR005539 GO:0003677
Mtr1g3018 321 SUPERFAMILY Homeodomain-like 239 309 IPR009057 -
Mtr1g3018 321 ProSitePatterns 'Homeobox' domain signature. 275 298 IPR017970 GO:0000981|GO:0006355
Mtr1g3018 321 Pfam KNOX1 domain 72 113 IPR005540 GO:0003677|GO:0005634
Mtr1g3018 321 SMART HOX_1 239 304 IPR001356 GO:0003677
Mtr1g3018 321 SMART ELK_2 217 238 IPR005539 GO:0003677
Mtr1g3018 321 Pfam KNOX2 domain 121 167 IPR005541 GO:0003677|GO:0005634
Mtr1g3018 321 Gene3D - 235 309 - -
Mtr1g3018 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 42 311 - -
Mtr1g3018 321 Pfam Homeobox KN domain 257 296 IPR008422 GO:0003677|GO:0006355
Mtr1g3018 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 311 - -
Mtr1g3018 321 SMART KNOX1_2 70 114 IPR005540 GO:0003677|GO:0005634
Mtr1g3018 321 ProSiteProfiles 'Homeobox' domain profile. 237 300 IPR001356 GO:0003677
Mtr1g3018 321 CDD homeodomain 249 301 IPR001356 GO:0003677
Mtr1g3018 321 ProSiteProfiles ELK domain profile. 217 237 IPR005539 GO:0003677
Mtr1g3018 321 SMART KNOX2_2 117 168 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3018 Mtr-Chr1 41345317 41351750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3018 40 315 Homeobox Transcription Factor Family AT1G23380 48.070 2.94e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr1g3018 KNOX2 7.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3018 - - cam:101509394 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3018 1 41345317 41351750 Mtr1g3018 1 41345317 41351750 ECH