Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3002 ATGGAAATGGGAAGCAGTAGCAGGAAGAAGAAGAAGCAACAACAACACGATTTGGAATTAGAAAAAGTTCGATTAATCAGTTTAGCTCTCGAACTCGGCTTCGACGAACTCGCCGCAAACCAATGTTTCGATCGTCTCGTCTCTCTCTACGGTGACGATGGTCGTGACTTTATCACTGTTGAACACTGCGGCGATGATTTTCTTGCGGCATTGGGGGAGTCGGTGCAAAATACGGAGGAATGGGATGATTTACACGAAATGGAATCACAAGCTGTTGGAACTTTGAATCACGTGCTTGACACGCGTGGTGATGGTTCTAAATGCTTCATTGATATTATTGACGATTCGCCGAAGAAACAAGGGAATAAGTTTGTGGAGTTGGGTTCAAGCGACGATGAGGAGGATACCAACTTTGATGTTTCAAGGGTTCAACATCCTACAAACTTAGTGAATGGTAGAAAGGGCATCACTCAGGGCTCCGTTTCATCAACTTCCAGAAAAATAAAATCATCTGCTGCAAAAGACAGAAATAGTACTCTCAGTTACGAAGAATTGAAGACGCTAGATGATATTGAATTGGCAAATGTTGTTATCTTTGGTAACAAGTCACTTCGACCACTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAACAAGATAGTTTTATTCTTATGCCTACTGGTGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCCGGAGTTACAGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGATCAGATAATAACACTTAACCTCAAGTTTGGAATACCTGCTACTTTTTTAAATTCTCAACAAAATGCTTCCCAAGCCGCAGCTGTTCTCCAAGAGCTAAGAAAAGACAAGCCTTCGTGCAAGCTTTTGTATGTGACACCTGAGAGAATTGCCGGAAACCAATCATTTGTTGGAATTTTAAAATGCATGCATCAGAAGGGACAACTTGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACACGATTTCCGGCCTGATTATCGGGGATTAGGATCTCTTAAGCAAAATTTTCCACGTGTTCCTGTCATGGCATTGACTGCCACTGCAACTCACCCAGTTCGTGAGGACATCTTAAATGCTCTGAGAATTCCACATGCAATTGTTCTCGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTGATTGTTAAGACAAAGGAACCACTAAAGCAGCTTGGACAGCTACTAATGGATCGTTTCAAGAGTCAGTGTGGCATTGTATACTGCCTTTCAAAAAGTGAATGTGTCGACGTATCAAAATTTTTGAATGAGAAATGTAAAATTAAGGCAGCGTATTATCATGCTGGCTTGGCTGCCCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCACGATGGAGAGGTTCATATTGTATGTGCAACTATTGCTTTTGGGATGGGGATAGACAAAGCTGATGTTCGATTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGACAATCTTCCTGCAGTTTGCATTGCCCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAGAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAATTAAAGGATGAATGCCGGAGGCAAACATTACTTGAACACTTTGGAGAATCTTTCGATAGAAAGAACTGCAAATATGGCTCTAGCCCTTGTGATAACTGTCTCAAGACTGCATCATGA 1818 0.4153 MEMGSSSRKKKKQQQHDLELEKVRLISLALELGFDELAANQCFDRLVSLYGDDGRDFITVEHCGDDFLAALGESVQNTEEWDDLHEMESQAVGTLNHVLDTRGDGSKCFIDIIDDSPKKQGNKFVELGSSDDEEDTNFDVSRVQHPTNLVNGRKGITQGSVSSTSRKIKSSAAKDRNSTLSYEELKTLDDIELANVVIFGNKSLRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQNASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFVGILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATATHPVREDILNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLGQLLMDRFKSQCGIVYCLSKSECVDVSKFLNEKCKIKAAYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKADVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMAQAKKMQQYCELKDECRRQTLLEHFGESFDRKNCKYGSSPCDNCLKTAS* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3002 605 Pfam DEAD/DEAH box helicase 206 374 IPR011545 GO:0003676|GO:0005524
Mtr1g3002 605 Gene3D - 396 604 IPR027417 -
Mtr1g3002 605 SMART helicmild6 438 520 IPR001650 -
Mtr1g3002 605 Gene3D - 161 395 IPR027417 -
Mtr1g3002 605 MobiDBLite consensus disorder prediction 151 172 - -
Mtr1g3002 605 Pfam RecQ zinc-binding 532 601 IPR032284 -
Mtr1g3002 605 CDD DEXHc_RecQ 198 395 - -
Mtr1g3002 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 563 IPR001650 -
Mtr1g3002 605 MobiDBLite consensus disorder prediction 151 168 - -
Mtr1g3002 605 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 327 336 IPR002464 -
Mtr1g3002 605 CDD SF2_C_RecQ 396 529 - -
Mtr1g3002 605 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 198 603 IPR004589 GO:0004386|GO:0006310
Mtr1g3002 605 Pfam Helicase conserved C-terminal domain 413 519 IPR001650 -
Mtr1g3002 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 388 IPR014001 -
Mtr1g3002 605 PANTHER BLOOM SYNDROME PROTEIN 38 603 - -
Mtr1g3002 605 PANTHER DNA HELICASE RECQ FAMILY MEMBER 38 603 - -
Mtr1g3002 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 541 IPR027417 -
Mtr1g3002 605 SMART ultradead3 200 404 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3002 Mtr-Chr1 41185163 41191108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3002 418 518 Eukaryotic Initiation Factors Gene Family AT5G11170 30.693 2.78e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3002 K10899 - gmx:100806070 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3002 1 41185163 41191108 Mtr1g3002 1 41185163 41191108 ECH