Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3000 ATGTCGTATCGTCCAAACGCAAACTCAAGGACCGAGGTCCGTCGCAACCGATACAAGGTCGCCGTCGATGCCGAAGAAGGCCGCCGTCGCCGTGAAGACACCATGGTTGAGATCCGTAAGAATCGTCGTGAAGAGAGTTTGCTCAAAAAGAGGCGCGAAGGTCTTCAACCTCAGCAGATTCCTTCCGCTCTTCACTCTAACGTCGTCGAGAAGAAGTTGGAACATTTGCCAACTATGGTTGCTGGTGTGTGGAGTGATGATAATAACTTGCAGCTTGAATCAACGACTCAGTTTCGAAAGCTGCTATCTATTGAACGTACTCCACCGATTGAGGAGGTTATACAGACTGGTGTTGTTTCTCGTTTTGTCGAGTTTCTGATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAACATAGCTTCTGGAACATCTGAAAACACTAAGGTGGTAATTGACCATGGGGCTGTCCCAATTTTTGTGAAGCTCCTTGCTTCTTCCAGCGACGATGTCCGTGAGCAGGCTGTGTGGGCATTAGGAAATGTTGCTGGAGATTCTCCCAGATGTCGTGATCTTGTTCTCGGTCACGGGGCTTTGGTTCCTCTTTTGGCACAATTGAATGAGCATGCGAAGCTTTCTATGCTGAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCTGGTCTTATACATTCAAATGATGAAGAAGTCTTGACTGATGCCTGCTGGGCACTATCATATCTTTCTGATGGTACAAACGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTATTGCACCCATCTCCTTCAGTGCTAATTCCTGCTCTTCGTACTGTTGGAAACATTGTCACTGGAGATGATTTGCAAACTCAGGTTATCATCAATCATCAGGCTCTTCCTTGTCTATACAATCTGTTGACCAATAATTATAAGAAAAGCATCAAGAAGGAAGCTTGCTGGACCATATCAAACATTACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATCGAGGCCAATATATTTGGTCCTCTGGTGAGTCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATTTCTAATGCTACATCTGGTGGATCTCACGAACAAATCAAGTACCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCCGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTTGGAGAAGCGGATAAAAATATAGGCAATAATGGTGATGTGAATCTATATGCCCAGATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGAAGATGAGACCATGCCTCCAGGCGATGCTTCTCAATCAGGATTCAACTTCGGTAGCGCTGAGGTTCCTTCTGTGCCTTCGGGTGGATTTAACTTCAATCAGTAG 1602 0.4526 MSYRPNANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQIPSALHSNVVEKKLEHLPTMVAGVWSDDNNLQLESTTQFRKLLSIERTPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQAVWALGNVAGDSPRCRDLVLGHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQVIINHQALPCLYNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIFGPLVSLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNNGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSAEVPSVPSGGFNFNQ* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3000 533 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Mtr1g3000 533 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Mtr1g3000 533 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Mtr1g3000 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Mtr1g3000 533 Gene3D - 13 52 IPR036975 GO:0006606
Mtr1g3000 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Mtr1g3000 533 Pfam Atypical Arm repeat 458 504 IPR032413 -
Mtr1g3000 533 PANTHER IMPORTIN ALPHA 2 522 - -
Mtr1g3000 533 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Mtr1g3000 533 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Mtr1g3000 533 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Mtr1g3000 533 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Mtr1g3000 533 Pfam Armadillo/beta-catenin-like repeat 108 147 IPR000225 GO:0005515
Mtr1g3000 533 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Mtr1g3000 533 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Mtr1g3000 533 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Mtr1g3000 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Mtr1g3000 533 SMART arm_5 360 400 IPR000225 GO:0005515
Mtr1g3000 533 SMART arm_5 190 232 IPR000225 GO:0005515
Mtr1g3000 533 SMART arm_5 149 189 IPR000225 GO:0005515
Mtr1g3000 533 SMART arm_5 403 443 IPR000225 GO:0005515
Mtr1g3000 533 SMART arm_5 317 358 IPR000225 GO:0005515
Mtr1g3000 533 SMART arm_5 275 315 IPR000225 GO:0005515
Mtr1g3000 533 SMART arm_5 106 147 IPR000225 GO:0005515
Mtr1g3000 533 SMART arm_5 234 273 IPR000225 GO:0005515
Mtr1g3000 533 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mtr1g3000 533 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Mtr1g3000 533 Gene3D - 74 497 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3000 Mtr-Chr1 41164358 41169627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3000 132 392 U-box Gene Family AT2G28830 22.901 5.04e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3000 K15042 - gmx:100789135 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3000 1 41164358 41169627 Mtr7g3615 7 53154077 53158582 ECH
Mtr1g3000 1 41164358 41169627 Mtr1g3000 1 41164358 41169627 ECH
Mtr4g4429 4 58312412 58316540 Mtr1g3000 1 41164358 41169627 ECH
Mtr2g1243 2 13472371 13476567 Mtr1g3000 1 41164358 41169627 ECH
Mtr7g3615 7 53154077 53158582 Mtr1g3000 1 41164358 41169627 PCT