Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2999 ATGGCGACGAGGAATCGCACTTTGATTTTCCGAAAATACAGAGATGCATTGAAAAGTGTCCGTGCTCCGTCGTCATCTTCGCCGCCGTCCACCTCCTCCCGCGGTGGTCCGGTAATCGAATTGGTCAGCACTTCGCTTCTTAATCCCAATCGCTCTTATGCTCCGCTTAGTACTGATGATCCTGGTGGTTCAAGTAAGGGTTTAAATCCAATTACTGTGGGGCTTCCTCCAGCATGGGTGGATGTATCTGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAACTGTCCAAGGCTCATGCAAAGGCCTTAATGCCATCGTTTGGAGATGGTAAGGACGACCAACATGCTATTGAGTCTCTAACACACGAGGTAACTGACTTGATAAAGAGATCGGAGAAGAGGCTGCGGAGACTTGCTTCTGCAGGGCCTTCTGAGGATTCTAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAGCCTCTCTGTAGATCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGACAGCAAAAAGAGGGTCACGATGGGGTTGACCTAGAGATCAACATGAATGGAAGTAAATCTAAATATGAAGACGATGACTTGGACAATATGATATTTAACGAGCATCAGATGGCCAAGCTAAAAAAAAGCGAAGCTTTCACAGTTGAAAGAGAAAAAGAGATCCAACAGGTTGTTGAATCTGTTAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAATGTGGCAACCACGGTTGAGGATGGCCTTAAACAATTGCAGAAGGCAGAGAGAACTCAGAAGAAGGGAGGCATGGTAATGTGTGCGTCAGTGCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 978 0.4417 MATRNRTLIFRKYRDALKSVRAPSSSSPPSTSSRGGPVIELVSTSLLNPNRSYAPLSTDDPGGSSKGLNPITVGLPPAWVDVSEEISANVQRARTKMAELSKAHAKALMPSFGDGKDDQHAIESLTHEVTDLIKRSEKRLRRLASAGPSEDSNVRKNVQRSLATDLQSLSVDLRKKQSTYLKRLRQQKEGHDGVDLEINMNGSKSKYEDDDLDNMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCASVLLIMCFVMLVLLIIKEIIL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2999 325 CDD SNARE_syntaxin16 234 290 - -
Mtr1g2999 325 MobiDBLite consensus disorder prediction 50 65 - -
Mtr1g2999 325 Gene3D - 76 283 - -
Mtr1g2999 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mtr1g2999 325 Coils Coil 83 103 - -
Mtr1g2999 325 SMART tSNARE_6 224 291 IPR000727 -
Mtr1g2999 325 Pfam SNARE domain 265 317 IPR000727 -
Mtr1g2999 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Mtr1g2999 325 PANTHER SYNTAXIN 1 320 IPR045242 -
Mtr1g2999 325 MobiDBLite consensus disorder prediction 50 69 - -
Mtr1g2999 325 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 320 - -
Mtr1g2999 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
Mtr1g2999 325 SMART SynN_4 70 185 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2999 Mtr-Chr1 41155200 41160460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2999 1 325 SNARE and Associated Proteins AT5G26980 77.982 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2999 K08489 - gmx:100796741 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2999 1 41155200 41160460 Mtr1g2999 1 41155200 41160460 ECH