Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2992 ATGTCGTCGGAGCCGTTGATTCAATCGTCTGATTCAGTATCAGCATCCCGGCAATGCGGAGAACCGGTGAGGATTTTCGAGGAATTGCCCAAAGCCAGTATTGTCTCCGTTTCGCGACCGGAGACGGGAGAAATAAGCCCGATTCTACTTTCCTATACAATTGAGTTGCAGTATAAACAGTTCAAGTGGCGTCTAAGGAAGAAAGCATCACAAGTTCTCTATTTACAGTTTGCTTTGCGGAAACGTGCAATAATTGAAGAATTTCATGACAAGCAAGAACAGGTAAAAGAGTGGCTTCATAGCTTAGGAATAGTAGATCAAATGGTAATGGTGCAGGATGATGAAGAACCTGATGATGGAGCTATACCTATACATCATGAAGACAGCGTTAAAAACAGATACGTCCCATCTGTTGCTGCTCTGTCAATAATTCGTCCATCATTAGGAGGTCAGCAGTCAGTTGCAGATAGAGCCAAAGTTGCAATGCAGAATTATTTGAATCTCTTTTTAGGAAACCTAGAGATTGTGAATTCTCGAGAGGTCTGCAAGTTTTTGGAGGTCTCCAAGCTATCATTTTTACAAGAGTATGGTCCAAAACTGAGAGAGGGATATGTTACAGTGAAGCATTTGTCAAATATTTCACAGGATTCTGATGTAACATGCTTTCCATTTCATTGGTTTCACTTTTGTGATAACAATTGGACGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCTTGCTGGATGATCCCTTCGACAACAAGCCACTGGATATAATCATGTTTGATGTCCTTCCATCCTCAACTGGCAAGGGAGAGACCAAAGTATATTTAGCTGAACCAACAAAGGAACGCAATCCTTTGCGTTTCACATTTAAGGTTACTAGTGGAAACAGGAGCATATGCTTGAGAACTATCAGCAGTGCTAAAGTTAAAACTTGGGTTACTGCAATTAATGAAGCTGGTCTAAGACCTTTGGAGGGTTGGTGTAGTCCTCACCGCTTTGGTTCATTTGCTCCAATAAGAGGTTTGACAGGAGATGGGAGCCAAGCCCAATGGTTTGTAGATGGACAAGCAGCATTTGAAGCAATTGCTTCTTCAATTCAAGATGCAAAATCAGAGATCTTCATAACAGGTTGGTGGCTGTGTCCAGAGCTATACCTGAGGCGGCCTTTTGATAGTTTTCCTACCTTTAGGTTAGACTCATTATTGGAAGAAAAGGCTAAACAAGGGGTTCAGATCTATGTGCTTATCTACAAGGAGGTTTCTATAGCTTTGAAAATCAACAGCTTGTATAGTATGAGAAGACTGCTCAAAATTCATGAAAATGTGAGGGTATTACGCTCTCCCGACCATTTTACTTCTGGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTATTGATTATAAGATTTGCTTTCTTGGAGGATTAGATTTATGCTTTGGACGATATGACACACCTGAGCATAAAGTGGGTGATAGTCCCTCTGTAATATGGCCCGGAAAGGACTATTACAACCCAAGAGAGTCTGAACCAAACTCATGGGAAGACACCATGAGAGATGAATTTGATCGCCAAAAATATCCACGTATGCCATGGCATGATGTCCATTGTGCTCTCTGGGGACCTCCCTGCCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAATCATGCTAAGAGAACTAAAGCTCCAAATGAACATGAAATTCCTCTGCTTATGCCTCACCATCACATGGTCATCCCACATTACATGGGAAGAAGTAAAGAGATTGACATTGATGATGAGAAAGATGAAGACAACAAGAAAGAAATTGACAAACAAGATTCATTCTCCTCACAATCCCCACCGCAAGATATACCGCTACTTTTACCTCAAGAAGCTGATGGAGCAGTCACTTCAAATGGAGATGATAGAAATTCCAGTGAATGTTCTCCATTATTGTCCCAAAATCTGGAAGGTGAAACTTTAGTTTCAGATAACCAGAATAAAGGGTTTCAAGACGAGTCTGTTCCTTTTAACTTGGAGGCTCAATGCATTGTTGATTCCATAGATGATTGGTGGGAAACACCAGAAGGTACCAATGATGCCACTACTTTGGAATATGGACAAGTTGGCCCACGCACTACTTGTCACTGTCAGGTAATCAGAAGTGTAAGCCAGTGGTCTGTTGGAACTAGTCAACCTGAAGAAAGCATTCACACTGCATATTGTTCTCTTATTGAAAAGGCAAAGCATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTAGCAATGGATGATACAATACAGAACCGTATTTTGGAAGCAATATACAGGCGCATTTTGAAAGCCCACAAAGAACAGGAAGATTTTAGAGTTATAGTTGTGCTTCCCCTCTTGCCTGGCTTCCAAGGTGGTCTGGATGATGGTGGTGCTGCAACTGTGAGAGCCTTAACACATTGGCAGTATAGAACCATTTCTAGAGAAAGGCACTCCATATTACACAACCTTGACGCTATAATTGGTCGTAAGACACATGATTATATTTCCTTTTATGGTCTAAGATCTCATGGTAGACTTCATCCAGATGGTCCTATGGCCACGAGCCAGGTATATGTGCACAGTAAGTTGATGATAATTGATGACCGTGTAGCTTTGATAGGATCATCTAATATAAATGACCGGAGTTTGCTTGGGTCAAGAGACTCTGAGATCGGAGTAGTTATAGAAGACAAAGAGTATGTTGAATCATTGATGAATGGAAAGCCGTGGAAAGCTGGGAAATTTTCCCATAGCCTCCGCTGTTCCCTATGGTCCGAGCATCTTGGTCTTCTTACTGGCGAGATCAGTAAAATCATGGATCCAGTGGCTGATTCAACCTACAAGGAACTGTGGGCAGCAACTGCAAAGGAAAATACAAGAATCTACCATGAAGTCTTTGCTTGCGTTCCCAATGATCAAATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTCCAGTGGAGGGAAAAACTTGGCCAGACCACCATAGATTTGGGAATAGCCCCTGATAAGTTAATATATCAGGAGAATGGAGAAACAAAAGTAACAGACCCAATAGATAGATTGAAGTCTATAAAGGGACTTCTTGTTTCCTTTCCTTTGGATTTCATGCGTGAGGAAGATTTAAGACCAGCTGTTATTGAAAGTGAGTTTTATGTAGCTCCTCAAGTATATCATTAA 3219 0.4141 MSSEPLIQSSDSVSASRQCGEPVRIFEELPKASIVSVSRPETGEISPILLSYTIELQYKQFKWRLRKKASQVLYLQFALRKRAIIEEFHDKQEQVKEWLHSLGIVDQMVMVQDDEEPDDGAIPIHHEDSVKNRYVPSVAALSIIRPSLGGQQSVADRAKVAMQNYLNLFLGNLEIVNSREVCKFLEVSKLSFLQEYGPKLREGYVTVKHLSNISQDSDVTCFPFHWFHFCDNNWTKVWAVLKPGFLALLDDPFDNKPLDIIMFDVLPSSTGKGETKVYLAEPTKERNPLRFTFKVTSGNRSICLRTISSAKVKTWVTAINEAGLRPLEGWCSPHRFGSFAPIRGLTGDGSQAQWFVDGQAAFEAIASSIQDAKSEIFITGWWLCPELYLRRPFDSFPTFRLDSLLEEKAKQGVQIYVLIYKEVSIALKINSLYSMRRLLKIHENVRVLRSPDHFTSGVYLWSHHEKLVIIDYKICFLGGLDLCFGRYDTPEHKVGDSPSVIWPGKDYYNPRESEPNSWEDTMRDEFDRQKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVIPHYMGRSKEIDIDDEKDEDNKKEIDKQDSFSSQSPPQDIPLLLPQEADGAVTSNGDDRNSSECSPLLSQNLEGETLVSDNQNKGFQDESVPFNLEAQCIVDSIDDWWETPEGTNDATTLEYGQVGPRTTCHCQVIRSVSQWSVGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLAMDDTIQNRILEAIYRRILKAHKEQEDFRVIVVLPLLPGFQGGLDDGGAATVRALTHWQYRTISRERHSILHNLDAIIGRKTHDYISFYGLRSHGRLHPDGPMATSQVYVHSKLMIIDDRVALIGSSNINDRSLLGSRDSEIGVVIEDKEYVESLMNGKPWKAGKFSHSLRCSLWSEHLGLLTGEISKIMDPVADSTYKELWAATAKENTRIYHEVFACVPNDQIHSRAALRQSMVQWREKLGQTTIDLGIAPDKLIYQENGETKVTDPIDRLKSIKGLLVSFPLDFMREEDLRPAVIESEFYVAPQVYH* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2992 1072 PANTHER PHOSPHOLIPASE D 15 1069 IPR015679 -
Mtr1g2992 1072 MobiDBLite consensus disorder prediction 599 625 - -
Mtr1g2992 1072 Gene3D - 225 323 IPR011993 -
Mtr1g2992 1072 SMART PH_update 199 326 IPR001849 -
Mtr1g2992 1072 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 868 895 IPR001736 GO:0003824
Mtr1g2992 1072 Pfam PLD-like domain 741 915 IPR025202 -
Mtr1g2992 1072 ProSiteProfiles PH domain profile. 198 324 IPR001849 -
Mtr1g2992 1072 SUPERFAMILY Phospholipase D/nuclease 321 579 - -
Mtr1g2992 1072 SMART pld_4 868 895 IPR001736 GO:0003824
Mtr1g2992 1072 SMART pld_4 459 486 IPR001736 GO:0003824
Mtr1g2992 1072 SUPERFAMILY Phospholipase D/nuclease 706 918 - -
Mtr1g2992 1072 SUPERFAMILY PH domain-like 231 322 - -
Mtr1g2992 1072 CDD PH_PLD 176 322 - -
Mtr1g2992 1072 CDD PLDc_vPLD1_2_yPLD_like_2 728 912 - -
Mtr1g2992 1072 Gene3D Endonuclease Chain A 344 585 - -
Mtr1g2992 1072 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 459 486 IPR001736 GO:0003824
Mtr1g2992 1072 Pfam Phospholipase D Active site motif 459 486 IPR001736 GO:0003824
Mtr1g2992 1072 CDD PLDc_vPLD1_2_yPLD_like_1 352 496 - -
Mtr1g2992 1072 PIRSF PLD_euk 32 594 IPR016555 GO:0004630|GO:0006654|GO:0048017
Mtr1g2992 1072 PIRSF PLD_euk 585 1072 IPR016555 GO:0004630|GO:0006654|GO:0048017
Mtr1g2992 1072 Gene3D Endonuclease Chain A 691 931 - -
Mtr1g2992 1072 PANTHER PHOSPHOLIPASE D ZETA 2 15 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2992 Mtr-Chr1 41059053 41069411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2992 24 1072 Phospholipase D Gene Family (Wang group) AT3G05630 66.446 0.0 1430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2992 K01115 - gmx:100796914 1862.43