Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2988 ATGAAAACATCAACTACCACTATTGTGTCCCTCTTTATTACCCTCTTCATCTCTCCCTCTCTAGCATCTCTCATTTCTTCCCCAAATAACACATGCAACCTTACACCCTTCCCATCATTTTGTTTATCTATTCTGCCCTCTCAATATTTGTCTATAGATGACCAAACCATTTTCTTCCTTCAACAATCCTTAACAATAACTCAAAACAATATTCAATCAATCTCCTCTTTTTTTAACCAATCCACCTTTCCATTTTCCACTTTACTTGTCCTTCAAGATTGTCTTAATCTTGCTGAATTAAACACTGATTTCTTGTCCATTGTACTCCAAGCCCTAGAAACCAATACTACAATGAGTAGTAATCAAGCTAATCATTTGCAAACATTGCTTAGTGCTGTTTTAACTAATCATCAAACATGTTTAGATGGTTTTCCTGAGGTAAATCCTTTTCCAAAAATTAGCACTACCTTATCAAACTCTCTTTCTGATGTGAACAAACTTTATAAGATAACTCTTCAGTTTTTCACTCTACGTCGGACTCAAACCATCATTGCAAGATTAACAAATCAAATTACAATTACAACAAATAATAGAAAGTTGTTACAGACAAGTGTTGACAATGTAATGGTGAGACAAAAAGTGGTTGTCAACCCTGATGGATCTGGTGATTTTATCACTATAAATGATGCCGTGGATGCTGCACCTACCAAAACAGGCAACAATGGGTACCATGTAATCTATGTGGTTGCTGGGATTTATAGCGAGTATATTTCTATTCCTAAGAGTAAAGAGAATCTAATGATCGTTGGAGATGGCATTGGTCGGACTATCATCACCGGTAATCGTAGCGTGGTTGATGGTTGGACCACTTTCCAATCCGCAACTTTTGCTGTAACCGGAAAAGGGTTTGTAGCGGTGAACATAACATTTCGTAACACCGCGGGATCCAACAAGCATCAAGCAGTTGCAGTGAGAAATGGAGCTGACATGTCAGTTTTCTACAAATGTAGCTTTGAAGGTTACCAAGACACACTATACGCACATTCCCTTCGACAATTCTACAAAAACTGCGACATTTATGGAACAGTAGATTTCATATTTGGCAATGCAGCTGCAATATTCCAAAACTGTAACATCCATCCAAGACTCCCAATGCAAAATCAATTCAATGCAATTACAGCACAAGGAAGAACAGATCCTAACCAAAACACAGGGTTCTCTATATGGAATTGTTACATTGTAGCAGCTAGTGAATTGGGTGGTGCAAATAATAATTATAATGACATAAAGACATATTTGGGTAGGCCTTGGAAAGAGTATTCAAGGACAATTTATATGCAAAGTTTTATTGATGGTTTAATTGATCCTAAGGGGTGGATGGAATGGTTAGGGGATTTTGCATTAAGCACATTGTATTATGCAGAGTATGCTAATTGGGGACAAGGTTCAAATACTAGTAATAGGGTCACATGGAAAGGGTACCATCAAATTGATGGAAAAGATGCTGATGAATTTACAGTTAACAAATTTATACAAGGTGACATGTGGTTGCCTATGACTGGAGTGCCTTTCAGAGCAGGGTTTCAGTGA 1590 0.3742 MKTSTTTIVSLFITLFISPSLASLISSPNNTCNLTPFPSFCLSILPSQYLSIDDQTIFFLQQSLTITQNNIQSISSFFNQSTFPFSTLLVLQDCLNLAELNTDFLSIVLQALETNTTMSSNQANHLQTLLSAVLTNHQTCLDGFPEVNPFPKISTTLSNSLSDVNKLYKITLQFFTLRRTQTIIARLTNQITITTNNRKLLQTSVDNVMVRQKVVVNPDGSGDFITINDAVDAAPTKTGNNGYHVIYVVAGIYSEYISIPKSKENLMIVGDGIGRTIITGNRSVVDGWTTFQSATFAVTGKGFVAVNITFRNTAGSNKHQAVAVRNGADMSVFYKCSFEGYQDTLYAHSLRQFYKNCDIYGTVDFIFGNAAAIFQNCNIHPRLPMQNQFNAITAQGRTDPNQNTGFSIWNCYIVAASELGGANNNYNDIKTYLGRPWKEYSRTIYMQSFIDGLIDPKGWMEWLGDFALSTLYYAEYANWGQGSNTSNRVTWKGYHQIDGKDADEFTVNKFIQGDMWLPMTGVPFRAGFQ* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2988 529 Pfam Plant invertase/pectin methylesterase inhibitor 29 172 IPR006501 GO:0004857
Mtr1g2988 529 SMART PMEI_2 23 174 IPR006501 GO:0004857
Mtr1g2988 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 177 IPR035513 -
Mtr1g2988 529 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Mtr1g2988 529 SUPERFAMILY Pectin lyase-like 212 526 IPR011050 -
Mtr1g2988 529 CDD PMEI-like_3 32 176 - -
Mtr1g2988 529 Pfam Pectinesterase 214 514 IPR000070 GO:0030599|GO:0042545
Mtr1g2988 529 Gene3D - 207 528 IPR012334 -
Mtr1g2988 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 177 IPR035513 -
Mtr1g2988 529 PANTHER PECTINESTERASE 13 527 - -
Mtr1g2988 529 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 175 IPR006501 GO:0004857
Mtr1g2988 529 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 13 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2988 Mtr-Chr1 41021302 41023673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2988 8 528 Carbohydrate Esterase AT4G02330 48.947 2.57e-180 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2988 K01051 - gmx:100810329 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2988 1 41021302 41023673 Mtr1g2988 1 41021302 41023673 ECH