Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2987 ATGGTTGAGGAAGATACACAAAAGAGAAGGAGAATCGTCATAATCGGTGTCTCAACCTTTTTACTAGTGGCTATGGTAGTTGCCGTTACCGTTGGTGTAAATTTTGGTGCTAATGATTCAAAGGATAACAACGGTAATACTCATATGGCTTCAACCGTAAAAGCGGTGAAAAGTTTTTGTCATCCAACAGATTACAAAAAAGAATGCGAGGAGAATGTAATAGCAAATGCCGGAAACACAACGGATTCAAGAGAGCTCATTAAAATTGCTTTCAATGTCACCGTTACAAAAATCAGCGATGGAATCAAGAAAACCAATCTTTTGCATGAGGTTGAGAAGGAACCAAGGGCAAAAATGGCACTAGACACATGCAAGCAATTAATGGATCTTTCTATTGGCGAATTCGATAGGTCAATAGAGGGAATAAAAAATTTTGATCTCAATAATTTAGAAAACATTCTTGTGAATTTAAAGGTTTGGTTAAGTGGTGCAATTACATACCAAGAAACTTGTTTAGATGGTTTTGAGAATACTACTAGTGATGCTAGCAAGAAAATGAAGAATATTTTAACAACTTCAATGCATATGAGTAGCAATGCACTTGCTGTCATTTCAGATTTGGCAGATAATGTTTTGGATTTGAACGCGACAACAGATGGACGTCGTCTTATTGATGATTATAAGGGCGAGTATGTGGGTGAACAAGTTGTTGCTAAAGATGATGTTAATGATGTTCCTTCTTGGGTTGGTGATGGTTTAAGTGTTGGTGTTCGAAGACTTCTTCATGTAAATCAACATAAACTCAAGGCTAATGTGGTTGTGGCTAAAGATGGTAGTGGAAAGTTTAAGAAAATCAATGATGCTTTGAAACAGGTTCCAAAGAAGAACCAAAAACCTTTTGTTATTCATATCAAGGAGGGTGTTTATCATGAGTATGTTGAAGTTACTAAGAAAATGACTCATGTTGTGTTTTTGGGTGATGGTGGCAACAAGACAAGAATTACTGGCAACAAAAATTTTATAGATGGAATTAACACTTACCAAACCCCCACTGTCGCTATTGAAGGAGATAACTTTGTAGCCATCAATATAGGATTCGAGAATTCAGCTGGACCTCAAAAACATCAAGCAGTAGCGATAAGGGTCCAAGCAGACAAGGCAATCTTTTACAAATGTTCAATGGACGGATATCAAGACACATTATATGTACACACCATGCGTCAATTTTATCGTGATTGTACAATTTCAGGCACCATTGACTTCATCTTTGGCGATGCAATATCTGTTTTCCAAAACTGCACATTCTTAGTTAAAAAACCATTAGAAAACCAACAATGCATTGTAACTGCACAAGGTAGAAAAGAGAGACATCAACCATCAGGAATAGTCATTCAAAATTGCCACATTGTGGCCGATACTCACAATGTGAAATTCGACAACAAAGCCTATCTTGCGCGTCCATGGAAGAATTTCTCAAGGACTGTTTTCATGAAAACTTACATTGGAGATTTGATTCAGCCAGATGGGTTTATGCCATGGCAAGGACCAAATGGTACTGTTTCTGGCATTGACACTTGTTTTTATGCTGAGTATAATAATAAAGGTCCTGGTTCGGATAAATCAAAGCGTGTAAAATGGCCTGGGATTAAGACACTTACATCACAATCTGCAAGTCACTTTTTACCATCTATGTTCTTTCATGGAGATGATTGGATTAAGGTTACTAAAATTCCTTACTCTTCTGGAGAGAAATCCACCAAGAAGTAA 1767 0.3707 MVEEDTQKRRRIVIIGVSTFLLVAMVVAVTVGVNFGANDSKDNNGNTHMASTVKAVKSFCHPTDYKKECEENVIANAGNTTDSRELIKIAFNVTVTKISDGIKKTNLLHEVEKEPRAKMALDTCKQLMDLSIGEFDRSIEGIKNFDLNNLENILVNLKVWLSGAITYQETCLDGFENTTSDASKKMKNILTTSMHMSSNALAVISDLADNVLDLNATTDGRRLIDDYKGEYVGEQVVAKDDVNDVPSWVGDGLSVGVRRLLHVNQHKLKANVVVAKDGSGKFKKINDALKQVPKKNQKPFVIHIKEGVYHEYVEVTKKMTHVVFLGDGGNKTRITGNKNFIDGINTYQTPTVAIEGDNFVAINIGFENSAGPQKHQAVAIRVQADKAIFYKCSMDGYQDTLYVHTMRQFYRDCTISGTIDFIFGDAISVFQNCTFLVKKPLENQQCIVTAQGRKERHQPSGIVIQNCHIVADTHNVKFDNKAYLARPWKNFSRTVFMKTYIGDLIQPDGFMPWQGPNGTVSGIDTCFYAEYNNKGPGSDKSKRVKWPGIKTLTSQSASHFLPSMFFHGDDWIKVTKIPYSSGEKSTKK* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2987 588 Pfam Pectinesterase 271 569 IPR000070 GO:0030599|GO:0042545
Mtr1g2987 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 207 IPR035513 -
Mtr1g2987 588 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Mtr1g2987 588 SUPERFAMILY Pectin lyase-like 269 581 IPR011050 -
Mtr1g2987 588 SMART PMEI_2 51 203 IPR006501 GO:0004857
Mtr1g2987 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 50 207 IPR006501 GO:0004857
Mtr1g2987 588 Pfam Plant invertase/pectin methylesterase inhibitor 55 202 IPR006501 GO:0004857
Mtr1g2987 588 CDD PMEI-like_3 58 208 - -
Mtr1g2987 588 Gene3D - 268 584 IPR012334 -
Mtr1g2987 588 PANTHER PECTINESTERASE 10 585 - -
Mtr1g2987 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 209 IPR035513 -
Mtr1g2987 588 PANTHER PECTINESTERASE 10 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2987 Mtr-Chr1 41018532 41020538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2987 3 582 Carbohydrate Esterase AT3G05610 48.205 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2987 K01051 - gmx:100794799 845.884