Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2986 ATGGCTGATAGTGATGCACAGATAGCAAGGAGAAGCGCCATAATTGGCGTATCTACCTTGTTATTGGTGGCCATGATTATTGTTGTCATGGTTGGCGCCAGAAACAAATATAGTTTTAAGGACGATATAGAAGACAATAAAAAGAATCATGTTGCTTCTACGATGAAAGCAATACGAACCATTTGTCAACCGACCGATTACAAGAAGGAATGTGAGGAATCCTTAAGAGCAGAGGCAGAGGCAGACAATGTTACAGACCCAAAAGAACTTATTAAAATAGCATTCAATGTTACCATCAAGAAAATTGGTGAAAAACTCAAGGAAACGGATATGTTGTGCGAGCTCGAGAAGGATCCTAGATCCAAGGATGCACTTGATACTTGCAAGCAACTTATGGATCTCTCAATAGATGAATTCACAAGGTCGCTTGATGGAATAGGCAAGTTGAATATTCAAAATATTGAGAACATTCTCATGAATTTGAAGGTTTGGCTCAATGGTGCTGTCACGTACATGGATACATGCTTGGATGGATTTGAGAATACTACTAGCGAAGCTGGTAAAAAAATGAAAGAGTTATTAACATCAAGCATGCACATGAGTAGCAATGCTCTTGCCATTATTACAGATTTTGCTGACACTATCTCTGATATGAACGTGACCAAAATTGTTGGACGTCGTCTCCTTCAAGATTATAAGACTCCTTCTTGGGTTGAACATCGCAAACTCCTTGATGCAAAGACAAACGCATTCAAACATACGCCTAATGTTACCGTAGCTTTAGATGGTAGTGGTGATTTTAAGAGCATCAATGAGGCATTGAAAAAGGTTCCTCATGAGGAGAGCAAAACACCATTTGTGATCTACATTAAAGCAGGTGTTTACCGAGAGTATGTTGAAGTTTTAACAAATATGACACATATTGTGTTTGTTGGTGATGGTGGTAAGAAGTCAATAATCACCGGCAACAAAAACTTTATGGATGGAGTTACGACTTACCACACCGCCACTGTTGCAATTCAAGGAGATCACTTTACCGCCATTAACATGGGTTTCGAGAACTCAGCTGGTCCACAAAAACATCAAGCAGTGGCACTAAGAGTTCAAGGAGATAAGGCTATCTTCTACAATTGCTCAATGGATGGATATCAAGACACACTTTATGTACACGCCATGCGTCAATTCTACCGTGACTGCACCATTTCAGGTACCATCGACTTTGTCTTTGGCAATGCAGAATCAGTATTCCAAAACTGCAAATTTGTGGTCCGAAAGCCTATGTCAGACCAACAATGCATTGTGACCGCACAAGGAAGAAAAGAAAGAACGGCACCATCAGCAATAGTCATCGAAGGAGGCTCTATTGTTGCCGACCCTGAGTTCTATCCAGTCAGGTTTGATCACAAGTCCTACCTAGCCCGTCCATGGAAGAACTTCTCAAGGACTATCATCATGGATACATTCATCGATGATTTGATTCATCCCGATGGTTTTTTGCCATGGCATACAGAAGAGGGGCCTATTAATATGGACACTTGCTACTATGCTGAATACCATAACTATGGCCCTGGTTCAGACAAATCAAAGCGTGTGAAATGGGCTGGAATCTATAACATCAATACAAAGGCTGCACAAAAGTTTGCACCATCCAAGTTCTTCCATGGTGGTGACTGGATTAAGGACACTGGAATTCCTTACTATCCAAATATACCGGAACACAAGAAGCACGAAAAGACAGTGCCTAAATGGTGA 1752 0.4092 MADSDAQIARRSAIIGVSTLLLVAMIIVVMVGARNKYSFKDDIEDNKKNHVASTMKAIRTICQPTDYKKECEESLRAEAEADNVTDPKELIKIAFNVTIKKIGEKLKETDMLCELEKDPRSKDALDTCKQLMDLSIDEFTRSLDGIGKLNIQNIENILMNLKVWLNGAVTYMDTCLDGFENTTSEAGKKMKELLTSSMHMSSNALAIITDFADTISDMNVTKIVGRRLLQDYKTPSWVEHRKLLDAKTNAFKHTPNVTVALDGSGDFKSINEALKKVPHEESKTPFVIYIKAGVYREYVEVLTNMTHIVFVGDGGKKSIITGNKNFMDGVTTYHTATVAIQGDHFTAINMGFENSAGPQKHQAVALRVQGDKAIFYNCSMDGYQDTLYVHAMRQFYRDCTISGTIDFVFGNAESVFQNCKFVVRKPMSDQQCIVTAQGRKERTAPSAIVIEGGSIVADPEFYPVRFDHKSYLARPWKNFSRTIIMDTFIDDLIHPDGFLPWHTEEGPINMDTCYYAEYHNYGPGSDKSKRVKWAGIYNINTKAAQKFAPSKFFHGGDWIKDTGIPYYPNIPEHKKHEKTVPKW* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2986 583 SMART PMEI_2 53 207 IPR006501 GO:0004857
Mtr1g2986 583 Gene3D - 250 570 IPR012334 -
Mtr1g2986 583 Pfam Plant invertase/pectin methylesterase inhibitor 57 207 IPR006501 GO:0004857
Mtr1g2986 583 PANTHER PECTINESTERASE 10 570 - -
Mtr1g2986 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 211 IPR035513 -
Mtr1g2986 583 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Mtr1g2986 583 Pfam Pectinesterase 256 555 IPR000070 GO:0030599|GO:0042545
Mtr1g2986 583 CDD PMEI-like_3 60 212 - -
Mtr1g2986 583 SUPERFAMILY Pectin lyase-like 254 568 IPR011050 -
Mtr1g2986 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 211 IPR035513 -
Mtr1g2986 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 209 IPR006501 GO:0004857
Mtr1g2986 583 PANTHER PECTINESTERASE 10 570 - -
Mtr1g2986 583 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2986 Mtr-Chr1 41014712 41016581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2986 3 566 Carbohydrate Esterase AT3G05610 46.643 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2986 K01051 - gmx:100776244 877.085