Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2967 ATGGATTCCAACAACAAATCTTCCGATCAAGTCATTTCAGAAATGGTTGAAATGGGTTTCCAGCATTCCCAAATTCTCGAAGCAATAAAAGTAGTGGGTCCTTCGATTCCAAGCGTTGTGGAGCATATCTTCAATACTAGTAATAGTAGCAGCAGTAACCGTGAACCATCCACAACCCATGTCACAAAATCAATTTCAAATAATGGGAAAGCTCTCAAAAAACGAACTTTTTCATCTTCTCTTCAAGTTCCAAAGTCCAGAACAATCAACCATTATTTTCAATCTAGTAGTAAAGTCAATGAGAAAAACAAAAATGTTGTTGTCGTTGATGATGATAATGATGATGAGGATGTGGAAGAGCACAAGGAGAAAGAGTTCTTACCGCGAATGGGATTTGATCATGATTCCGCAGTAGCTCATGCTATCGATGTTGCATCTGATTGGCAGCAAAAAGCTAGCATTTTGTTGCAAAAGCATTTTGGTTTTTCATCTTTGAAAAGTTTTCAGAAGGAAGCTCTCTCTGCTTGGATTGATCATAGAGATTGTCTTGTCTTGGCTGCAACTGGATCTGGGAAATCTCTATGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCGCCTTTAATAAGCCTAATGCACGATCAATGCTTAAAGCTAACAAAACATGGAATCAGTGCTTGCTTTCTTGGCTCTGGGCAGCCTGATAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTATAGTATAGTGTATATTTGTCCAGAAACAGTTCTAAGATTGATTCAACCGTTGCAGAAGCTTGCTGAAACCCGTGGTATTGCTTTGTTTGCAATTGATGAGGTACATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGCTTACAGCCGACTGTCTGTATTGAGGGAAAATTTCACTACTGGCAAGCTAAAATCCTTGAAATTTGATATACCCATGATGGCGTTGACAGCTACAGCTACAAAGAGAGTTCGAGAAGACATTTTAAAATCACTGCGTTTGTCAAAAGATACAAGTGTTGTTCTCACATCATTTTTTCGACCTAATTTACGCTTCATGGTAAAGCATAGTAGAACATCATGGGCTTCTTACGAGAAAGATTTTCATGAATTGATTAAAGTATATGGTGGGAATAAGAAAGCTTTCACCTCAGGTGATGCAGATGGTGTTTCCATTAGCTCTGATGCTTCTGATACAGACAGTGTTTCTTCTGATGATGTGGACGGCAACCAAGATGACTGTGATGATAGGGATATTAATGTAATGCACTCTGGAAACACCAGCAATCATAAAAAAAGAAGAAAACTGACAATTGAGTTCCTGGAAAATGATGTTGACGTCTTTCAAAGTGCGGATGACTTGGATGTTACATGTGGTGAATTTTGTGTGCAACCTCCTCCCAAGCAATGTGAGTTATCTGAGACAATTGATACACCTACGAAACCAGAAAAAAGACTCAAAATGCTTAAGGAGCCTTTGGGACAAGGACCAACAATTATATATGTACCCACCAGAAAAGATACAGTGAGAATTGCCAAGTATCTCTGCAAGTCTGGTGTGAAGGCTGCCGCTTATAATGCAGGGCTGCCCAAGTTGCATCTAAGAAGGACTCATAAAGAGTTTCATGAAAATACTTTAGAGGTTGTTGTTGCAACAATAGCGTTTGGAATGGGAATTGATAAATCGAATGTTAGAAGAATCATCCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTATATGCAAACCTAGCAAGGAAGCCATCACTTTTGCCAAGTCGTAGAAGTGAAGATATGACAAAACAAGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTCGAGCAAAGATACTTGTAGAATACTTCGGAGAGGATTTCAGCCATCAGAAGTGTCTCTTATGTGATGTTTGCAATAATGGACCACCTCAAAGACTGAATCTAAAAGAGGAGGCTTGTATTTTACTGCAAACTATAATGCTGGCCGGAAATGCACGTAGCTATTCCGTGGATTCCTCGGATAATGATGATATCCATTTCAATTCCAAGGATAGAAGACTAGGAGAGAGGCCAAGTCTAACGACGTTAGTTAGAAGTATAAGGGAGCAGTTTCAAAAATTCTTAACCACTGATATACTGTGGTGGAGAGGCCTTACTCGAATTTTGGAAGCTAAAGGATATATCAGGGAAGGAGATGACAAGACAAATGTTCAGATAAAATACCCGGACTTAACAGAACTAGGTTTGGAATTTGTGAAGTCCATAACTGAAGAAACTTTTTATGTTTACCCTGAGGCAGATATGTTACTTGAGACAAAAACTGACAAACCGTTTTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGTCAGCGTCTAGAAAGAATGCAAGTTGATAGAAGTCCAATGAAGCGGCAGAACCCCAGAAAGCAAAGAAAGAGGAGAGTTAGAAAAACAAAACCTGATTTGAGGACTTCTCGGGGTAGATTATCAGCAAAACTCTCAAAAAAGTAA 2631 0.396 MDSNNKSSDQVISEMVEMGFQHSQILEAIKVVGPSIPSVVEHIFNTSNSSSSNREPSTTHVTKSISNNGKALKKRTFSSSLQVPKSRTINHYFQSSSKVNEKNKNVVVVDDDNDDEDVEEHKEKEFLPRMGFDHDSAVAHAIDVASDWQQKASILLQKHFGFSSLKSFQKEALSAWIDHRDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKHGISACFLGSGQPDNTVEKKAMRGMYSIVYICPETVLRLIQPLQKLAETRGIALFAIDEVHCVSKWGHDFRPAYSRLSVLRENFTTGKLKSLKFDIPMMALTATATKRVREDILKSLRLSKDTSVVLTSFFRPNLRFMVKHSRTSWASYEKDFHELIKVYGGNKKAFTSGDADGVSISSDASDTDSVSSDDVDGNQDDCDDRDINVMHSGNTSNHKKRRKLTIEFLENDVDVFQSADDLDVTCGEFCVQPPPKQCELSETIDTPTKPEKRLKMLKEPLGQGPTIIYVPTRKDTVRIAKYLCKSGVKAAAYNAGLPKLHLRRTHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEDMTKQAYIMLSDCFRYGMNTSCCRAKILVEYFGEDFSHQKCLLCDVCNNGPPQRLNLKEEACILLQTIMLAGNARSYSVDSSDNDDIHFNSKDRRLGERPSLTTLVRSIREQFQKFLTTDILWWRGLTRILEAKGYIREGDDKTNVQIKYPDLTELGLEFVKSITEETFYVYPEADMLLETKTDKPFSSFSEWGKGWADPEIRRQRLERMQVDRSPMKRQNPRKQRKRRVRKTKPDLRTSRGRLSAKLSKK* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2967 876 SMART ultradead3 161 366 IPR014001 -
Mtr1g2967 876 Pfam DEAD/DEAH box helicase 168 336 IPR011545 GO:0003676|GO:0005524
Mtr1g2967 876 MobiDBLite consensus disorder prediction 403 439 - -
Mtr1g2967 876 Gene3D - 613 795 IPR036388 -
Mtr1g2967 876 MobiDBLite consensus disorder prediction 46 68 - -
Mtr1g2967 876 SMART helicmild6 520 601 IPR001650 -
Mtr1g2967 876 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 155 383 IPR004589 GO:0004386|GO:0006310
Mtr1g2967 876 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 2 866 - -
Mtr1g2967 876 Gene3D - 483 610 IPR027417 -
Mtr1g2967 876 Gene3D - 2 52 - -
Mtr1g2967 876 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Mtr1g2967 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 654 IPR001650 -
Mtr1g2967 876 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 866 - -
Mtr1g2967 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 349 IPR014001 -
Mtr1g2967 876 Pfam Helicase conserved C-terminal domain 492 600 IPR001650 -
Mtr1g2967 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 611 IPR027417 -
Mtr1g2967 876 Pfam RecQ zinc-binding 624 672 IPR032284 -
Mtr1g2967 876 SUPERFAMILY UBA-like 7 47 IPR009060 GO:0005515
Mtr1g2967 876 MobiDBLite consensus disorder prediction 833 876 - -
Mtr1g2967 876 MobiDBLite consensus disorder prediction 845 861 - -
Mtr1g2967 876 CDD DEXHc_RecQ 156 356 - -
Mtr1g2967 876 Gene3D - 129 357 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2967 Mtr-Chr1 40900011 40906967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2967 495 619 Eukaryotic Initiation Factors Gene Family AT5G11170 26.400 2.36e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2967 K10900 - gmx:100793222 1201.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2967 1 40900011 40906967 Mtr1g2967 1 40900011 40906967 ECH