Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2964 ATGTATCATTATTCTTCAAATCAGCAGAACTACCAAAACACAGATGATAATGGCTTAGCCTTCATTGATGCTGATCATGTCAAGTTTCCAACACACTCAGATGGTTTTATTTCAAAAGAGAATGTGTCAGCTGATGAAAACAAAGTTCCTCCACTTGTGAATAAGATCAATAAAGGGCAGTATCATTGGGATGAAGAACAACACAGGTTATTTCTGGAGGGGTTTGAGAAGTATGGCAAGGGAAAATGGATAAAGATTGCACAACATGTTGGTACAAAAACTACAACTCAAGTTGCTAGCCATGCTCAAAAGCATTTCATTCGAATTAAAGAAAGTGCTAAGTTATCAAAAATAAGGAAAAGAAGAAGCATCTTTTACACTACTACTACTACTAATAACTCATGGGATGGAAATTTTCACCCTCTTCTCTATAGGGACAACATTCCATCTCCTCCTTCTCCACCTCCAAATATTGAAACAGAATCAATTGTGGAGCAGATACTACAACAACTTCAACAAGCACAAGAAGCATTGTGGAACGACAATGTCATATTGTCATAA 561 0.3654 MYHYSSNQQNYQNTDDNGLAFIDADHVKFPTHSDGFISKENVSADENKVPPLVNKINKGQYHWDEEQHRLFLEGFEKYGKGKWIKIAQHVGTKTTTQVASHAQKHFIRIKESAKLSKIRKRRSIFYTTTTTNNSWDGNFHPLLYRDNIPSPPSPPPNIETESIVEQILQQLQQAQEALWNDNVILS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2964 186 CDD SANT 63 106 IPR001005 -
Mtr1g2964 186 Pfam Myb-like DNA-binding domain 63 105 IPR001005 -
Mtr1g2964 186 PANTHER TRANSCRIPTION FACTOR SRM1 5 139 - -
Mtr1g2964 186 SUPERFAMILY Homeodomain-like 56 111 IPR009057 -
Mtr1g2964 186 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Mtr1g2964 186 Gene3D - 59 112 - -
Mtr1g2964 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 110 IPR017930 -
Mtr1g2964 186 ProSiteProfiles SANT domain profile. 63 110 IPR017884 -
Mtr1g2964 186 SMART sant 59 108 IPR001005 -
Mtr1g2964 186 ProSiteProfiles Myb-like domain profile. 63 106 IPR001005 -
Mtr1g2964 186 Coils Coil 157 177 - -
Mtr1g2964 186 PANTHER TRANSCRIPTION FACTOR KUA1 5 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2964 Mtr-Chr1 40884029 40884946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2964 63 101 EF-hand Containing Proteins AT3G07740 43.590 5.58e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr1g2964 Myb_DNA-binding 6.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2964 - - mtr:MTR_1g083180 359.377