LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g2962	ATGGCCGCCGGAGCAACCAAAAACTCGAATGAAACCACACGTGAGCACACAGAACAAGAAATAGACGAGGACCGAAGCTTCGAAGAGCTAGGGTTAGACGCACGTCTCGTTCGCGCTTTACTGAAGAAACGAATTGAGAAACCTACTCCAATTCAACACGTTGCTATTCCGTTGATTCTCGAAGGTAAAGACGTCGTTGCTCGCGCAAAAACTGGTTCTGGAAAAACACTTGCTTATCTTCTTCCATTGCTTCAGAAACTGTTTACTGCTAATGTTGATAGGAAGAAACTAGCTCCTAATGTTTTCGTTCTCGCACCTAGTCGTGAACTATGCCAACAGATATATGTGGAAGTGAAGTCACTCCTTGAGCTATGCAAAGTTCCGCTCAAAGCTGTGCAGTTGAATAGCAATATGCTTGCTACTGACTTGCAAGCAGCATTGGTTGGGCCTCCCGATGTTTTAATCTCCACTCCTGCTTGCATAGCCAAGTGTTTGTCTAACTCAGTACTTCAGGCAGCATCCATTAATGGTTCTCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGACATAAAAGCTTTAACACCTCACATACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGACGATGTTGACAAACTAAAAAAGTTGATGTTACACAACCCCGTTATCTTGACTCTGCCTGAAGTGGGAAACCGTAAGGATGAGGTCATCCCTAAAAATGTTCAGCAGTTCTGGATCTATTGTCCTGCCAATGATAAGTTGCTCTACATCCTTGCTATGTTGAAGTTGGAGTTAGTCCAAAAGAAAGTTCTGATATTCACTAATAACATAGATACGAGTTTCAGATTGAAACTATTTTTGGAGAAGTTTGGGATCAAGTCGGCTGTTTTAAATGCTGAATTGCCTCAGAATTCCCGTCTCCATATTCTTGAGGAATTCAATGCCGGCCTATTTGATTATCTAATTGCGACAGATATCAGCCAGTCAACGGAGAAGGATGAAGCACCTAAGGAAAATATTGTTGGATCAAAAAAGTCTAGAAAATATACAAAGCTAAAATTAGATTCTGAATTCGGAGTAGTAAGGGGAATTGACTTCAAAAATGTATACACGGTTATAAACTTTGAAATGCCCCGCAGTGTGACAGGATACGTACATCGAATTGGACGCACGGGAAGAGCATACAGTTCTGGTACTTCTATCTCCTTGGTTTCTACAGATGAGATGGATACCTTTGAAGAAGTAAGATCTTTTGTTGGGGACAATGAAAACAACGGCTCAAACTCAATTGCAGAGTTTCCCTTACTCACCAAGAGTGCAGTTGAATCTCTACGGTATAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGCAAAGCTGACGGCTCACTTTCAAACTAATCCAAGAGACTTAGATCTATTGAAACATGACAAAGTTTTGAGCAAAACTGCTCCTCCTCCACACCTTCGCGATGTCCCAGATTACCTAATAGACAAAACAACAAAAGAAGCAAGGGCAATGGTTAAGCTTACAAGAGATGCAATGGGAAATAATAATCACCGACGGGGATCCAAGAGAAAATCAAGGAAAGGCGGTGACCCTCTGATGGCCATCTCTGCCGGGGTATCAAAAAAACCGCACAAAGGTTTTAAAAAGGACGGTGCAAGCAATGGCAAAAGCAATGGTGATAGACAAAAACACAAAAAGACAAAGGCAATTTGA	1815	0.416	MAAGATKNSNETTREHTEQEIDEDRSFEELGLDARLVRALLKKRIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTANVDRKKLAPNVFVLAPSRELCQQIYVEVKSLLELCKVPLKAVQLNSNMLATDLQAALVGPPDVLISTPACIAKCLSNSVLQAASINGSLETLVLDEADLLLSYGYENDIKALTPHIPRSCQCLLMSATSSDDVDKLKKLMLHNPVILTLPEVGNRKDEVIPKNVQQFWIYCPANDKLLYILAMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDISQSTEKDEAPKENIVGSKKSRKYTKLKLDSEFGVVRGIDFKNVYTVINFEMPRSVTGYVHRIGRTGRAYSSGTSISLVSTDEMDTFEEVRSFVGDNENNGSNSIAEFPLLTKSAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSAKLTAHFQTNPRDLDLLKHDKVLSKTAPPPHLRDVPDYLIDKTTKEARAMVKLTRDAMGNNNHRRGSKRKSRKGGDPLMAISAGVSKKPHKGFKKDGASNGKSNGDRQKHKKTKAI*	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g2962	604	SMART	ultradead3	44	257	IPR014001	-
	Mtr1g2962	604	PANTHER	RNA HELICASE	9	600	-	-
	Mtr1g2962	604	MobiDBLite	consensus disorder prediction	577	594	-	-
	Mtr1g2962	604	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	16	238	IPR027417	-
	Mtr1g2962	604	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	249	432	IPR027417	-
	Mtr1g2962	604	Pfam	DEAD/DEAH box helicase	49	226	IPR011545	GO:0003676\|GO:0005524
	Mtr1g2962	604	PANTHER	ATP-DEPENDENT RNA HELICASE DDX56-RELATED	9	600	-	-
	Mtr1g2962	604	MobiDBLite	consensus disorder prediction	541	604	-	-
	Mtr1g2962	604	MobiDBLite	consensus disorder prediction	1	24	-	-
	Mtr1g2962	604	CDD	DEADc_DDX56	32	239	-	-
	Mtr1g2962	604	SMART	helicmild6	294	408	IPR001650	-
	Mtr1g2962	604	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	273	454	IPR001650	-
	Mtr1g2962	604	Gene3D	-	2	240	IPR027417	-
	Mtr1g2962	604	CDD	SF2_C_DEAD	254	417	-	-
	Mtr1g2962	604	Pfam	Helicase conserved C-terminal domain	265	408	IPR001650	-
	Mtr1g2962	604	Gene3D	-	242	447	IPR027417	-
	Mtr1g2962	604	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	25	53	IPR014014	GO:0003724
	Mtr1g2962	604	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	56	237	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g2962	Mtr-Chr1	40859678	40867511	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g2962	22	421	Eukaryotic Initiation Factors Gene Family	AT3G13920	27.792	4.35e-36	138

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g2962	K14810		-	gmx:100800749	955.281