Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2961 ATGGATCAAGCAAGATCGAACAACAACAACAACATCGATGAGAATGTAGGAATTCCAGACGATTTACGTTGCAAGAGATCAGACGGGAAGCAATGGAGATGCACAGCCATGTCGATGCCAGATAAAACCGTTTGCGAGAAGCATTACATTCAAGCGAAGAAAAGAGCAGCCAATTCCGCCATGAGAGCTAATCTCAAGAAATCTAAGCCTGATTCTGATGTTAATTTGGAGAGTAAGAGTGATGATTTTGATGCTCCGCTTTCGACTGCGATTAATAATAATCATCGTTCTTCCACTTCCTCTGGAAAGAAGTTGTTTGATAAGGTTTCTAAGAATCAGTTTCGGTATACTCCTGAGGGCGTTCTTGGTTCTTCTTCTGGTAATAATGTTTCCAAGCCTGGTGATGGTGGTGATGTTTCGCCTGATGAGGATGCTGTTCTGTTTGAAGAAAATTGGGTCTCGAATGATTCACAGCATGCTTCTGGTGACGATTCTGCTGGGAAAATGACAGGCAGGAGCATGGATGTTGATGTCAACACTGAATTTTCTAATGGAACATCGGATTCTTCTCAAGAAACTGGCGGGCAGACTTGCCATCAGTGTAGGAAGAATGTTAAAGATGTTACTTGGTGCCTTAAGTGTGATAGGAGAGGATACTGTGATAGCTGCATATCAACATGGTATTCCGACATTCCATTGGATGAAATTCAGAAGATATGTCCTGCATGTCGTGGTATATGCAATTGTAAAATTTGCTTACGGAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTACTGGATAAGTTACAGTATTTGCACGTGTTGCTCTCTTCAGTGCTTCCCGTGGTAAAGCAGATCCACCGAGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAGTTGAATGCAGACGAGCAGATGTGCTGCAATTTATGTAGGATACCTATCACTGATTATCATCGACGCTGCCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCGAGATCTTCGGGAAGCTACTTTACATCAGAGTGAAGAACCTCAAACTGAGCATGCAAAAACTACTGATCGAAACATATTAAGCAAGTTTCCTCACTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTATTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTCGCAAAATTGGTAAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAACGAGTGATGCTGATGGTCCGCCAGAAACCGGATTGAATGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGTCCAACATCTGAAGAACTCAAAACTGATGGGATTGGCATGTTTAGAACACACTGGAAAACTGGTGAGCCCATCATCGTTAAGCAAGTATTTGATAGGTCATCAATTTCAAGCTGGGACCCATTGGTCATATGGAGAGGGATTCTTGAGACAACAGATGAGAATATGAAAGATGATAACAGAATGGTTAAGGCCATAGATTGCTTAGATGGGTCCGAGATTGATATCGAGCTTAATCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAGCTGAAGGATTGGCCTACACCTCGTGCATCTGAAGAATTTCTTTTGTACCAAAGACCTGAATTTATCAGCAAACTGCCTTTACTTCAGTATATACACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATATATATATCTTATGGGATTAGTGACGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATTCAAGTGAAGTAAAGCTGAAGGACTGGCAGCGGACAAACGTTGAAATGATGCAGAAAACTTCTAAGGAATCTGAGGAGAAAGAATCTCATGGGGATCCAGATATATGTTCAAGAGCGAGTTCACCCGATTCATCCTTTTATACAAAAATTAATGGACTGGATTTAGAATCAGACCAGAAAGATTCGACTATGGATCAAGGGGTTGAAGTTTATTCTAGTGCTGAAGGGAATTTGGTCAATTCTGAAATTCCATTAAGAGAAAATGGAGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAGTTTGGGAATTCAGATGATATAGTTACATGGCCTCTTTATGGTGGAGCTATTTTTCTTGACCGGCACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACTGTTCAGTTGGCCCTTGATTTCTTATCTCCTGAAAGCCTGGGAGAGGCTGTAAGATTGGCAGAGGAGGTTCGCCGTCTACCTAATGAACATGAAGCAAAACTTCAAGTTTTGGAGGTGGGGAAGATATCTCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGTGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAAATGTTTAAGCAGAGGCAGATAACTTGTGCTTGA 2793 0.4114 MDQARSNNNNNIDENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKSKPDSDVNLESKSDDFDAPLSTAINNNHRSSTSSGKKLFDKVSKNQFRYTPEGVLGSSSGNNVSKPGDGGDVSPDEDAVLFEENWVSNDSQHASGDDSAGKMTGRSMDVDVNTEFSNGTSDSSQETGGQTCHQCRKNVKDVTWCLKCDRRGYCDSCISTWYSDIPLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATLHQSEEPQTEHAKTTDRNILSKFPHWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRTSDADGPPETGLNALRLCQYSQREASNDNYLYCPTSEELKTDGIGMFRTHWKTGEPIIVKQVFDRSSISSWDPLVIWRGILETTDENMKDDNRMVKAIDCLDGSEIDIELNQFMKGYSEGRILENGWPQILKLKDWPTPRASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHSSEVKLKDWQRTNVEMMQKTSKESEEKESHGDPDICSRASSPDSSFYTKINGLDLESDQKDSTMDQGVEVYSSAEGNLVNSEIPLRENGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGNSDDIVTWPLYGGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLALDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMFKQRQITCA* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2961 930 MobiDBLite consensus disorder prediction 60 172 - -
Mtr1g2961 930 MobiDBLite consensus disorder prediction 669 686 - -
Mtr1g2961 930 Pfam JmjC domain, hydroxylase 790 843 IPR003347 -
Mtr1g2961 930 MobiDBLite consensus disorder prediction 1 15 - -
Mtr1g2961 930 PANTHER JMJC DOMAIN PROTEIN JMJ24 11 919 - -
Mtr1g2961 930 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 919 IPR045109 GO:0032454|GO:0033169
Mtr1g2961 930 MobiDBLite consensus disorder prediction 85 107 - -
Mtr1g2961 930 MobiDBLite consensus disorder prediction 669 695 - -
Mtr1g2961 930 Pfam WRC 19 59 IPR014977 -
Mtr1g2961 930 Gene3D Cupin 458 869 - -
Mtr1g2961 930 ProSiteProfiles JmjC domain profile. 570 860 IPR003347 -
Mtr1g2961 930 SUPERFAMILY Clavaminate synthase-like 479 870 - -
Mtr1g2961 930 SMART cupin_9 577 860 IPR003347 -
Mtr1g2961 930 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 193 257 IPR018866 -
Mtr1g2961 930 ProSiteProfiles Zinc finger RING-type profile. 198 244 IPR001841 -
Mtr1g2961 930 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g2961 930 MobiDBLite consensus disorder prediction 178 197 - -
Mtr1g2961 930 MobiDBLite consensus disorder prediction 117 133 - -
Mtr1g2961 930 MobiDBLite consensus disorder prediction 66 80 - -
Mtr1g2961 930 ProSiteProfiles WRC domain profile. 18 62 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2961 Mtr-Chr1 40850027 40858439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2961 19 59 GRF Transcription Factor Family AT3G13960 46.341 1.81e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr1g2961 JmjC 7.4e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2961 K15601 - gmx:100801287 1471.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2961 1 40850027 40858439 Mtr1g2961 1 40850027 40858439 ECH